Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   MA852_RS06630 Genome accession   NZ_CP092025
Coordinates   1265042..1265692 (+) Length   216 a.a.
NCBI ID   WP_002823003.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260042..1270692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS06610 (MA852_06610) - 1260898..1262352 (-) 1455 WP_238504965.1 MotA/TolQ/ExbB proton channel family protein -
  MA852_RS06615 (MA852_06615) fbaA 1262451..1263515 (-) 1065 WP_002777549.1 class II fructose-bisphosphate aldolase -
  MA852_RS06620 (MA852_06620) - 1263515..1264336 (-) 822 WP_002823001.1 peptidylprolyl isomerase -
  MA852_RS06625 (MA852_06625) nth 1264419..1265045 (+) 627 WP_057044924.1 endonuclease III -
  MA852_RS06630 (MA852_06630) CJE1441 1265042..1265692 (+) 651 WP_002823003.1 DNA/RNA non-specific endonuclease Regulator
  MA852_RS06635 (MA852_06635) - 1265702..1266337 (+) 636 WP_002823005.1 trimeric intracellular cation channel family protein -
  MA852_RS06640 (MA852_06640) - 1266414..1266617 (+) 204 WP_002823007.1 EexN family lipoprotein -
  MA852_RS06645 (MA852_06645) cmoA 1266637..1267341 (-) 705 WP_002823009.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  MA852_RS06650 (MA852_06650) - 1267345..1268181 (-) 837 WP_078436325.1 bifunctional riboflavin kinase/FAD synthetase -
  MA852_RS06655 (MA852_06655) - 1268150..1268899 (-) 750 WP_038832443.1 TlyA family RNA methyltransferase -
  MA852_RS06660 (MA852_06660) - 1268896..1269900 (-) 1005 WP_057044930.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25090.93 Da        Isoelectric Point: 10.0521

>NTDB_id=655182 MA852_RS06630 WP_002823003.1 1265042..1265692(+) (CJE1441) [Campylobacter coli strain 14158-6]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYINCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVKVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFKECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=655182 MA852_RS06630 WP_002823003.1 1265042..1265692(+) (CJE1441) [Campylobacter coli strain 14158-6]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATATCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTACAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTAATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTAAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTAAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

67.005

91.204

0.611
  CJE0566 Campylobacter jejuni RM1221

65.99

91.204

0.602