Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MA852_RS03175 Genome accession   NZ_CP092025
Coordinates   607899..608669 (+) Length   256 a.a.
NCBI ID   WP_002825342.1    Uniprot ID   A0A697BA69
Organism   Campylobacter coli strain 14158-6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 602899..613669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS03160 (MA852_03160) - 603775..605709 (-) 1935 WP_238505198.1 ribonuclease R family protein -
  MA852_RS03165 (MA852_03165) ilvC 605832..606854 (+) 1023 WP_238505200.1 ketol-acid reductoisomerase -
  MA852_RS03170 (MA852_03170) - 606857..607909 (+) 1053 WP_233907083.1 divergent polysaccharide deacetylase family protein -
  MA852_RS03175 (MA852_03175) dprA 607899..608669 (+) 771 WP_002825342.1 DNA-processing protein DprA Machinery gene
  MA852_RS03180 (MA852_03180) ruvX 608666..609046 (+) 381 WP_002792200.1 Holliday junction resolvase RuvX -
  MA852_RS03185 (MA852_03185) - 609057..609911 (+) 855 WP_409187139.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MA852_RS03190 (MA852_03190) msrA 610134..610634 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MA852_RS03195 (MA852_03195) ppa 610682..611200 (-) 519 WP_002776378.1 inorganic diphosphatase -
  MA852_RS03200 (MA852_03200) - 611211..611786 (-) 576 WP_002781658.1 adenylate kinase -
  MA852_RS03205 (MA852_03205) aspS 611783..613534 (-) 1752 WP_238505202.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28805.21 Da        Isoelectric Point: 5.2497

>NTDB_id=655173 MA852_RS03175 WP_002825342.1 607899..608669(+) (dprA) [Campylobacter coli strain 14158-6]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIIALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=655173 MA852_RS03175 WP_002825342.1 607899..608669(+) (dprA) [Campylobacter coli strain 14158-6]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCCACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTATCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTGCCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGTGTGAGTGTGGATGAAGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAA
CTTGAAGGAAAAATTTCCATAGAGGGTCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A697BA69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

48.333

93.75

0.453