Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG553_RS19025 Genome accession   NZ_CP108161
Coordinates   4117234..4118649 (-) Length   471 a.a.
NCBI ID   WP_405980132.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4112234..4123649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG553_RS19005 (OG553_18970) - 4112966..4113901 (-) 936 WP_405980128.1 A/G-specific adenine glycosylase -
  OG553_RS19010 (OG553_18975) - 4113925..4114545 (-) 621 WP_405980129.1 phosphatase PAP2 family protein -
  OG553_RS19015 (OG553_18980) - 4114706..4115503 (+) 798 WP_405980130.1 hypothetical protein -
  OG553_RS19020 (OG553_18985) disA 4115808..4116932 (-) 1125 WP_405980131.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG553_RS19025 (OG553_18990) radA/sms 4117234..4118649 (-) 1416 WP_405980132.1 DNA repair protein RadA Machinery gene
  OG553_RS19030 (OG553_18995) - 4119066..4120799 (+) 1734 WP_405980133.1 BACON domain-containing protein -
  OG553_RS19035 (OG553_19000) - 4120822..4121625 (-) 804 WP_405980134.1 hypothetical protein -
  OG553_RS19040 (OG553_19005) - 4121687..4122613 (+) 927 WP_405980135.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49163.31 Da        Isoelectric Point: 8.0042

>NTDB_id=655160 OG553_RS19025 WP_405980132.1 4117234..4118649(-) (radA/sms) [Streptomyces sp. NBC_00158]
MAARTSRSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSAAALPIAQVDGKTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATGDHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVQPSLLVLDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVTEVADMGDALRVLPRGRSRTPAKERAAGE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=655160 OG553_RS19025 WP_405980132.1 4117234..4118649(-) (radA/sms) [Streptomyces sp. NBC_00158]
ATGGCTGCCCGTACATCCCGCTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGACCACCGCCAA
GTGGCTCGGCCGGTGCCCCGAGTGCCAGGCGTGGGGGACCGTCGAGGAGATGGGCGCGCCCGCCGTGCGGACCACCGCGG
CCGGCCGCGTCTCGGCCGCCGCGCTGCCGATCGCCCAGGTCGACGGCAAGACCGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTGCTCGGCGGCGGCCTCGTCCCCGGCGCGGTGGTGCTGCTGGCCGGCGAGCCGGGCGTCGGCAAGTC
GACGCTGCTGCTGGACGTCGCCGCGAAGGCGGCCACCGGCGACCACCGCACCCTCTACGTCACCGGCGAGGAGTCCGCGA
GCCAGGTGCGGCTGCGGGCCGACCGCATCAACGCCCTCAGCGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCC
GTACTGGGCCACCTCGACGCGGTGCAGCCCTCCCTGCTGGTCCTGGACTCCGTACAGACCATCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCGAAGGAGCGGGGCATGGCCA
CCCTGCTCGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTCGTGGACGTGGTGCTC
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGCTACGGCGCGACGGACGAGGTCGG
CTGCTTCGAACTGCACGACGAGGGCATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCCG
TGCCGGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCG
CAGATCCCGTCCCCGCGCCGCACCACCTCGGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGGCGGATCACGGCGCTGGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTGACGGAGCCGGCCGCCG
ACCTGGCGATCGCGCTGGCGCTTGCCTCGGCGGCGAGCGACGTGCCGCTGCCGAAGAACCTGGTCGCCATCGGGGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACGGGCGTGCAGCGGCGCCTGGCCGAGGCGCACCGGCTCGGGTTCACGCACGC
GCTGGTCCCGGCGGATCCGGGGAAGGTGCCGGCGGGCATGAAGGTGACCGAGGTGGCGGACATGGGGGACGCGCTACGTG
TCCTGCCGCGCGGGCGCTCGCGTACTCCGGCCAAGGAGCGGGCGGCGGGCGAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(84-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.178

0.42
  radA Streptococcus pneumoniae Rx1

42.92

95.966

0.412
  radA Streptococcus pneumoniae D39

42.92

95.966

0.412
  radA Streptococcus pneumoniae R6

42.92

95.966

0.412
  radA Streptococcus pneumoniae TIGR4

42.92

95.966

0.412
  radA Streptococcus mitis SK321

44.393

90.87

0.403
  radA Streptococcus mitis NCTC 12261

44.393

90.87

0.403