Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ANG_RS03415 Genome accession   NZ_AP013072
Coordinates   665963..666652 (+) Length   229 a.a.
NCBI ID   WP_025271661.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 660963..671652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS03395 (ANG_0672) htpX 661490..662386 (+) 897 WP_003038595.1 zinc metalloprotease HtpX -
  ANG_RS03400 (ANG_0673) - 662455..663714 (-) 1260 WP_003038598.1 hypothetical protein -
  ANG_RS03405 (ANG_0674) - 663902..664438 (+) 537 WP_003038571.1 YceD family protein -
  ANG_RS03410 (ANG_0675) gndA 664530..665954 (+) 1425 WP_003038563.1 NADP-dependent phosphogluconate dehydrogenase -
  ANG_RS03415 (ANG_0676) covR 665963..666652 (+) 690 WP_025271661.1 DNA-binding response regulator Regulator
  ANG_RS03420 (ANG_0678) - 666864..669053 (+) 2190 WP_025271662.1 PTS transporter subunit IIBC -
  ANG_RS03425 (ANG_0679) - 669070..669885 (+) 816 WP_025271663.1 endonuclease/exonuclease/phosphatase family protein -
  ANG_RS03430 (ANG_0680) - 669932..670513 (-) 582 WP_025271664.1 hypothetical protein -
  ANG_RS03435 (ANG_0681) nrdR 670680..671153 (+) 474 WP_003023591.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26414.41 Da        Isoelectric Point: 6.2732

>NTDB_id=65515 ANG_RS03415 WP_025271661.1 665963..666652(+) (covR) [Streptococcus anginosus subsp. whileyi MAS624]
MAKRILLVEKEKKLAQFIGLELQKEGYRVDLFETGKDALASARANQYDLFLLNFTLDDMTGTEFAAQLSVIKPASVIIVL
DNRDNILQYTEEIQRFAVAYMVEPFIVTDLVEKISAIFRGRDFIDQHCSQMKVPTSYRNLRIDVQNHTVYRGEEVIALTR
REYDLLATLMGSHQALSREQLLERVWKYEGAVETNVVDVYIRYLRSKIDIAGQKSYIKTVRGVGYAMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=65515 ANG_RS03415 WP_025271661.1 665963..666652(+) (covR) [Streptococcus anginosus subsp. whileyi MAS624]
ATGGCGAAGCGGATTTTATTAGTTGAGAAAGAAAAAAAATTAGCGCAATTTATTGGCTTAGAATTACAAAAAGAAGGTTA
TCGGGTTGATCTTTTCGAAACGGGAAAAGATGCTTTGGCGTCTGCGAGAGCTAATCAATACGATTTATTCCTGTTGAATT
TTACGCTTGACGATATGACAGGAACAGAATTTGCCGCACAATTAAGTGTGATAAAGCCTGCTTCGGTCATCATTGTATTG
GATAATCGTGATAATATTCTTCAATATACTGAGGAAATCCAACGCTTTGCTGTTGCTTACATGGTAGAACCATTCATTGT
GACGGACTTAGTTGAAAAAATTTCTGCCATTTTTCGTGGGCGTGATTTTATTGACCAGCATTGTAGTCAGATGAAAGTTC
CAACATCTTATCGGAATCTTCGGATTGATGTGCAAAATCATACAGTTTATCGAGGTGAAGAAGTGATTGCTTTGACTCGA
AGAGAGTATGATTTATTAGCAACATTGATGGGAAGTCATCAGGCTTTAAGCCGTGAACAGTTGTTAGAACGCGTGTGGAA
ATACGAAGGAGCTGTTGAAACAAATGTTGTCGATGTTTATATTCGCTATCTTCGTAGTAAAATTGATATAGCGGGGCAAA
AAAGTTATATAAAAACCGTGCGTGGTGTTGGTTATGCTATGCAAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.826

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.978

100

0.45

Multiple sequence alignment