Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MA849_RS07375 Genome accession   NZ_CP092020
Coordinates   1456995..1457306 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 14991B     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1451995..1462306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA849_RS07355 (MA849_07355) ctsE 1452864..1454423 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MA849_RS07360 (MA849_07360) ctsX 1454413..1455000 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MA849_RS07365 (MA849_07365) ctsP 1455004..1455612 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MA849_RS07370 (MA849_07370) ctsD 1455605..1457017 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA849_RS07375 (MA849_07375) ctsR 1456995..1457306 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  MA849_RS07380 (MA849_07380) nifJ 1457330..1460890 (-) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MA849_RS07385 (MA849_07385) - 1460983..1461624 (-) 642 WP_058001004.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=655144 MA849_RS07375 WP_002880445.1 1456995..1457306(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 14991B]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=655144 MA849_RS07375 WP_002880445.1 1456995..1457306(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 14991B]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981