Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   MA544_RS06125 Genome accession   NZ_CP092017
Coordinates   1167846..1168148 (+) Length   100 a.a.
NCBI ID   WP_002875928.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15065A     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1162846..1173148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA544_RS06100 (MA544_06100) rpsR 1163210..1163470 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MA544_RS06105 (MA544_06105) lon 1163529..1165904 (-) 2376 WP_002878791.1 endopeptidase La -
  MA544_RS06110 (MA544_06110) - 1165921..1166568 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  MA544_RS06115 (MA544_06115) fliW 1166729..1167118 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MA544_RS06120 (MA544_06120) proC 1167118..1167849 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  MA544_RS06125 (MA544_06125) ctsT 1167846..1168148 (+) 303 WP_002875928.1 hypothetical protein Machinery gene
  MA544_RS06130 (MA544_06130) - 1168145..1168807 (+) 663 WP_002858296.1 hypothetical protein -
  MA544_RS06135 (MA544_06135) - 1168804..1169256 (+) 453 WP_002859148.1 hypothetical protein -
  MA544_RS06140 (MA544_06140) hemD 1169253..1169882 (-) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  MA544_RS06145 (MA544_06145) thiE 1169860..1170492 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  MA544_RS06150 (MA544_06150) thiD 1170482..1171294 (-) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MA544_RS06155 (MA544_06155) - 1171291..1171977 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  MA544_RS06160 (MA544_06160) - 1171974..1172735 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12161.32 Da        Isoelectric Point: 9.0653

>NTDB_id=655077 MA544_RS06125 WP_002875928.1 1167846..1168148(+) (ctsT) [Campylobacter jejuni subsp. jejuni strain 15065A]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=655077 MA544_RS06125 WP_002875928.1 1167846..1168148(+) (ctsT) [Campylobacter jejuni subsp. jejuni strain 15065A]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98