Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   MA544_RS06120 Genome accession   NZ_CP092017
Coordinates   1167118..1167849 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni subsp. jejuni strain 15065A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1162118..1172849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA544_RS06090 (MA544_06090) rpsF 1162262..1162639 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  MA544_RS06095 (MA544_06095) ssb 1162648..1163199 (+) 552 WP_057035967.1 single-stranded DNA-binding protein -
  MA544_RS06100 (MA544_06100) rpsR 1163210..1163470 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MA544_RS06105 (MA544_06105) lon 1163529..1165904 (-) 2376 WP_002878791.1 endopeptidase La -
  MA544_RS06110 (MA544_06110) - 1165921..1166568 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  MA544_RS06115 (MA544_06115) fliW 1166729..1167118 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MA544_RS06120 (MA544_06120) proC 1167118..1167849 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  MA544_RS06125 (MA544_06125) ctsT 1167846..1168148 (+) 303 WP_002875928.1 hypothetical protein Machinery gene
  MA544_RS06130 (MA544_06130) - 1168145..1168807 (+) 663 WP_002858296.1 hypothetical protein -
  MA544_RS06135 (MA544_06135) - 1168804..1169256 (+) 453 WP_002859148.1 hypothetical protein -
  MA544_RS06140 (MA544_06140) hemD 1169253..1169882 (-) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  MA544_RS06145 (MA544_06145) thiE 1169860..1170492 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  MA544_RS06150 (MA544_06150) thiD 1170482..1171294 (-) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MA544_RS06155 (MA544_06155) - 1171291..1171977 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  MA544_RS06160 (MA544_06160) - 1171974..1172735 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=655076 MA544_RS06120 WP_002859150.1 1167118..1167849(+) (proC) [Campylobacter jejuni subsp. jejuni strain 15065A]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=655076 MA544_RS06120 WP_002859150.1 1167118..1167849(+) (proC) [Campylobacter jejuni subsp. jejuni strain 15065A]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAGCATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GAGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996