Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG851_RS22840 Genome accession   NZ_CP108156
Coordinates   4903769..4905172 (-) Length   467 a.a.
NCBI ID   WP_406512517.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4898769..4910172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG851_RS22815 (OG851_22745) - 4899063..4899635 (-) 573 WP_030158464.1 SigE family RNA polymerase sigma factor -
  OG851_RS22820 (OG851_22750) - 4899819..4900772 (-) 954 WP_266626824.1 A/G-specific adenine glycosylase -
  OG851_RS22825 (OG851_22755) - 4900796..4901410 (-) 615 WP_266626823.1 phosphatase PAP2 family protein -
  OG851_RS22830 (OG851_22760) - 4901580..4902368 (+) 789 WP_323179102.1 hypothetical protein -
  OG851_RS22835 (OG851_22765) disA 4902390..4903514 (-) 1125 WP_266626819.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG851_RS22840 (OG851_22770) radA/sms 4903769..4905172 (-) 1404 WP_406512517.1 DNA repair protein RadA Machinery gene
  OG851_RS22845 (OG851_22775) - 4905344..4907062 (+) 1719 WP_266626815.1 BACON domain-containing protein -
  OG851_RS22850 (OG851_22780) - 4907117..4907866 (-) 750 WP_389874932.1 hypothetical protein -
  OG851_RS22855 (OG851_22785) - 4908038..4908967 (+) 930 WP_405701486.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 48731.86 Da        Isoelectric Point: 8.0067

>NTDB_id=655076 OG851_RS22840 WP_406512517.1 4903769..4905172(-) (radA/sms) [Streptomyces sp. NBC_00161]
MAARTSRSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEAHRTLYVTGEESASQVRLRADRINALSDHLFLAAETDLS
AVLGHLDAVQPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVTEVADMGDALRVLPRGRTRAAAKE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=655076 OG851_RS22840 WP_406512517.1 4903769..4905172(-) (radA/sms) [Streptomyces sp. NBC_00161]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGGCGGTGCCCCGAATGCCAGGCGTGGGGCACCGTGGAGGAGATGGGCGGGGCGCCCGCGGTGCGGACCACCG
CCGCCGGGCGGGTCTCGGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACGGCGACCGCCCGCAGCACCGGCGTG
GACGAGCTGGACCGGGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTCCTGCTGGCCGGCGAGCCCGGCGTCGGCAA
GTCGACGCTGCTGCTGGACGTGGCGGCGAAGGCGGCCAGCGAGGCGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCACTGAGCGACCACCTCTTCCTCGCCGCCGAGACGGATCTGTCC
GCCGTACTGGGCCACCTCGACGCCGTGCAGCCCTCGCTGCTGATCCTGGACTCCGTACAGACCGTGGCCTCCCCCGAGAT
CGACGGCGCACCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGG
CCACCCTGCTGGTCGGGCACGTCACCAAGGACGGGGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTC
CTCAGCTTCGAGGGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTGAAGAACCGGTACGGGGCCACCGACGAGGT
CGGCTGCTTCGAACTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCGGAGG
CCGTCCCCGGGACCTGCCTGACGGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGAC
TCGCAGATCCCCTCGCCCCGGCGGACCACCTCGGGCCTGGAGACCTCACGCGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGCGACATCTACTCCGCCACCGTGGGCGGGGTGAAGCTGACGGAGCCGGCCG
CCGACCTGGCGATCGCGCTCGCGCTGGCCTCGGCGGCGAGCGACGTCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAG
GTCGGCCTCGCGGGCGAGGTGCGGCGCGTGACCGGCGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGTTTCACGCA
CGCGCTGGTGCCCGGCGATCCCGGGAAGGTGCCGGCCGGGATGAAGGTCACCGAGGTCGCGGACATGGGCGACGCCCTGC
GGGTCCTGCCGCGCGGGCGGACGCGGGCGGCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)

AAA domain (AAA_25)

(85-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.833

97.216

0.426
  radA Streptococcus pneumoniae D39

42.572

96.574

0.411
  radA Streptococcus pneumoniae R6

42.572

96.574

0.411
  radA Streptococcus pneumoniae Rx1

42.572

96.574

0.411
  radA Streptococcus pneumoniae TIGR4

42.572

96.574

0.411
  radA Streptococcus mitis NCTC 12261

44.028

91.435

0.403
  radA Streptococcus mitis SK321

44.028

91.435

0.403