Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ANG_RS01590 Genome accession   NZ_AP013072
Coordinates   287669..290098 (+) Length   809 a.a.
NCBI ID   WP_003036608.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 282669..295098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS01560 (ANG_0293) rplQ 283081..283467 (+) 387 WP_003026513.1 50S ribosomal protein L17 -
  ANG_RS01565 (ANG_0294) comR/comR2 283894..284367 (+) 474 WP_020999414.1 sigma-70 family RNA polymerase sigma factor Regulator
  ANG_RS01570 (ANG_0295) rpsB 284600..285382 (+) 783 WP_003036542.1 30S ribosomal protein S2 -
  ANG_RS01575 (ANG_0296) tsf 285465..286508 (+) 1044 WP_003026508.1 translation elongation factor Ts -
  ANG_RS01580 (ANG_0297) - 286595..286945 (-) 351 WP_003036598.1 hypothetical protein -
  ANG_RS01585 (ANG_0298) - 287204..287665 (+) 462 WP_003036579.1 CtsR family transcriptional regulator -
  ANG_RS01590 (ANG_0299) clpC 287669..290098 (+) 2430 WP_003036608.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ANG_RS01595 (ANG_0300) - 290145..290585 (+) 441 WP_003036494.1 GNAT family N-acetyltransferase -
  ANG_RS01600 (ANG_0301) dusB 290659..291630 (-) 972 WP_003036548.1 tRNA dihydrouridine synthase DusB -
  ANG_RS01605 (ANG_0302) hslO 291617..292489 (-) 873 WP_003036595.1 Hsp33 family molecular chaperone HslO -
  ANG_RS01610 (ANG_0303) - 292710..293981 (-) 1272 WP_003036496.1 toxic anion resistance protein -
  ANG_RS01615 (ANG_0304) - 293999..294817 (-) 819 WP_003036522.1 hypothetical protein -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 89896.32 Da        Isoelectric Point: 6.6032

>NTDB_id=65502 ANG_RS01590 WP_003036608.1 287669..290098(+) (clpC) [Streptococcus anginosus subsp. whileyi MAS624]
MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKIYQQEGSFTIWPF
SHRMKVLFLTAERIAEAVHAKNLGTEHVLLAMLFDRGSLAARLLEFTGFSYEDKEGVLRMTDLRKNLEHKASWGKEDIKA
IRHLNKNIAAAKQTMANMMGMPPSTSGGLEDYTRDLTEMARAGLLEPVVGRDKEISRMLQILSRKTKNNPVLVGDAGVGK
TALALGLAQRVAAGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKYIEKDAALSRRFAKITIEEPTVADSIAILQGLKKSYEEHHKVVITDSAIET
AVKYAHRYLTSKHLPDSAIDLLDEAAATVQNKGPQNHVKAELSAADEALMAGDWKKVGALLEKESQPIVYKLKVKDEDIL
ATLSGLSGIPVQKLTQTDAKKYLHLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFMFLGPTGVGKTELAKA
LAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSE
DMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVK
AGKLKFEVL

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=65502 ANG_RS01590 WP_003036608.1 287669..290098(+) (clpC) [Streptococcus anginosus subsp. whileyi MAS624]
ATGAAATATTCAAAAGCTTTGACAGAAAGTATTGAGTCGGCACAACTGTTAGCGAGTCATTTTGAAACGGATTATTTGGA
GTCTTGGCAGCTGTTGATTGCTATGGCAAATAATCCTTATAGTGTTGCTGGTTCAGTTTTAAATGATTACCCACTTGAAA
TTGATGATTTTGAGAAAGCAGCCTTTCATATCACAGGAAAGATTTATCAACAAGAGGGAAGCTTTACCATTTGGCCATTT
TCTCATCGTATGAAAGTGTTGTTTTTAACAGCTGAGCGAATTGCAGAGGCTGTGCATGCTAAGAATCTTGGGACAGAGCA
TGTGTTGTTAGCTATGCTGTTTGACCGAGGAAGTTTGGCGGCACGTCTCCTTGAATTTACAGGCTTTAGCTATGAGGATA
AAGAAGGCGTTTTACGTATGACCGATCTTCGGAAAAACTTAGAGCATAAGGCTAGCTGGGGTAAAGAAGATATAAAAGCT
ATTCGCCACTTAAATAAAAATATTGCTGCAGCGAAACAAACGATGGCCAATATGATGGGGATGCCTCCTTCTACTAGTGG
CGGACTAGAAGATTATACCCGTGATTTAACCGAAATGGCTCGTGCTGGTCTTTTAGAACCGGTCGTTGGGCGTGATAAAG
AGATTTCTCGCATGCTTCAGATTTTAAGTCGCAAGACGAAAAATAATCCAGTGTTGGTAGGAGATGCAGGAGTTGGGAAG
ACAGCATTAGCCCTTGGTTTGGCGCAACGTGTGGCAGCTGGTCAAGTTCCAAATGAGCTTGCAAAGATGAGAGTTTTAGA
GCTAGATTTAATGAATGTGGTGGCTGGAACTCGTTTTCGTGGTGATTTTGAGGAACGGATGAACAATATTATCAATGATA
TTGAAGCAGATGGACATGTCATTCTTTTCATTGATGAGCTTCATACTATTATGGGGTCGGGTAGCGGGATTGACTCGACA
TTAGATGCAGCGAACATTCTCAAGCCAGCTTTAGCTAGAGGGACGCTCAGAACGGTCGGCGCAACGACACAAGAAGAGTA
CCAGAAATATATTGAAAAGGACGCAGCTCTTTCACGGAGATTTGCCAAGATTACTATTGAAGAGCCGACGGTAGCTGATA
GTATTGCGATTTTACAGGGGCTCAAGAAAAGTTATGAAGAACACCACAAAGTGGTGATTACAGATTCAGCGATTGAGACA
GCTGTTAAGTATGCTCATCGTTATCTAACAAGCAAACACCTACCTGACTCGGCGATTGATTTGCTAGATGAAGCTGCTGC
AACGGTACAAAATAAAGGTCCACAAAATCATGTGAAAGCAGAATTGAGTGCAGCAGACGAGGCTTTAATGGCAGGCGATT
GGAAAAAGGTTGGCGCTTTGTTGGAGAAAGAAAGTCAGCCAATTGTCTACAAACTAAAGGTTAAAGACGAGGATATTTTG
GCAACACTCAGCGGTTTATCGGGCATTCCTGTGCAAAAGTTGACGCAAACAGATGCGAAGAAATACCTTCATTTAGAAAA
GGAACTTCACAAACGGGTCATTGGGCAAAATGAAGCAATTTCTGCTATCAGTCGAGCGATTCGGCGCAATCAATCCGGCA
TCCGCACCAGCAAACGTCCCATCGGCTCCTTTATGTTCTTAGGGCCAACCGGGGTCGGAAAAACTGAGCTAGCTAAGGCT
TTGGCAGAAGTTCTCTTTGATGACGAAACGGCACTGATTCGTTTTGATATGAGTGAATACATGGAAAAATTTGCTGCCAG
TCGCCTTAATGGAGCGCCTCCAGGTTATGTTGGTTATGAAGAAGGGGGCGAATTGACTGAAAAAGTTCGCAATCGTCCGT
ACTCTGTGCTCCTCTTTGATGAGGTAGAAAAAGCTCATCCTGATATTTTCAATGTGCTTCTCCAAGTCTTAGATGACGGG
GTGCTGACAGACAGCAAGGGGCGTAAGGTGGATTTTTCCAATACCATTATCATTATGACCAGCAATCTTGGTGCGACAAG
TTTACGGGACGACAAGACGGTTGGGTTCGGAGCAAGAGATGTTCGTTTTGATCATGAAAATATGGAAAAACGAATGATGG
AAGAGCTAAAGAAAGCTTATCGTCCAGAATTTATTAACCGAATTGATGAAAAGGTTGTTTTTCACAGTTTGACTAGCGAA
GACATGCAGGAAGTAGTGAAAATTATGGTGCAACCGCTCATTTCTAGTCTTGCAGAAAAAGGAATTAAACTCAAATTCCA
GCCGAGTGCTTTGAAGCTTCTAGCTCAAGAGGGCTATGATCCTGAAATGGGAGCTCGTCCATTGCGTCGAATTCTACAAA
CTCGGGTGGAAGACCATTTATCAGAATTACTTTTAGCAGGTGAGCTAAAAACGGGACAAAGCTTAAAAGTCGGTGTCAAG
GCTGGAAAATTGAAGTTTGAAGTGCTCTGA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(717-797)

AAA domain (Cdc48 subfamily) (AAA_2)

(539-710)

ATPase family associated with various cellular activities (AAA) (AAA)

(231-350)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(14-60)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(91-130)

AAA lid domain (AAA_lid_9)

(371-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus pneumoniae TIGR4

77.559

100

0.778
  clpC Streptococcus pneumoniae Rx1

77.559

100

0.778
  clpC Streptococcus pneumoniae D39

77.559

100

0.778
  clpC Streptococcus mutans UA159

66.871

100

0.674
  clpC Streptococcus thermophilus LMG 18311

66.095

100

0.667
  clpC Streptococcus thermophilus LMD-9

65.973

100

0.666
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

50

100

0.513
  clpC Bacillus subtilis subsp. subtilis str. 168

45.33

99.258

0.45
  clpE Streptococcus mutans UA159

47.106

76.885

0.362

Multiple sequence alignment