Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG420_RS21900 Genome accession   NZ_CP108147
Coordinates   4805475..4806074 (-) Length   199 a.a.
NCBI ID   WP_328830640.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4800475..4811074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG420_RS21880 (OG420_21850) - 4801475..4802542 (-) 1068 WP_328830642.1 aspartate-semialdehyde dehydrogenase -
  OG420_RS21885 (OG420_21855) - 4802542..4803813 (-) 1272 WP_266770013.1 aspartate kinase -
  OG420_RS21890 (OG420_21860) - 4804066..4804785 (+) 720 WP_328830641.1 sulfite exporter TauE/SafE family protein -
  OG420_RS21895 (OG420_21865) - 4804823..4805482 (-) 660 WP_266770016.1 DUF5063 domain-containing protein -
  OG420_RS21900 (OG420_21870) recR 4805475..4806074 (-) 600 WP_328830640.1 recombination mediator RecR Machinery gene
  OG420_RS21905 (OG420_21875) - 4806144..4806491 (-) 348 WP_328830639.1 YbaB/EbfC family nucleoid-associated protein -
  OG420_RS21910 (OG420_21880) - 4806753..4807463 (+) 711 WP_328933480.1 SLATT domain-containing protein -
  OG420_RS21915 (OG420_21885) - 4807483..4809009 (-) 1527 WP_328933479.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21826.27 Da        Isoelectric Point: 4.9908

>NTDB_id=654982 OG420_RS21900 WP_328830640.1 4805475..4806074(-) (recR) [Streptomyces sp. NBC_00169]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654982 OG420_RS21900 WP_328830640.1 4805475..4806074(-) (recR) [Streptomyces sp. NBC_00169]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGACTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCACGGTG
ATCTGTGTCGTGGAGGAGCCGAAGGACGTGGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGGGTCGGACCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGTT
CCGTCACGGAACTGATCCTTGCCACGGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462