Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG420_RS20940 Genome accession   NZ_CP108147
Coordinates   4600567..4601976 (+) Length   469 a.a.
NCBI ID   WP_266769766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4595567..4606976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG420_RS20920 (OG420_20895) - 4595571..4596395 (-) 825 WP_328933569.1 sugar phosphate isomerase/epimerase -
  OG420_RS20925 (OG420_20900) - 4596794..4597726 (-) 933 WP_266769761.1 Ppx/GppA phosphatase family protein -
  OG420_RS20930 (OG420_20905) - 4597810..4598667 (+) 858 WP_328933568.1 hypothetical protein -
  OG420_RS20935 (OG420_20910) - 4598671..4600365 (-) 1695 WP_405880116.1 BACON domain-containing protein -
  OG420_RS20940 (OG420_20915) radA/sms 4600567..4601976 (+) 1410 WP_266769766.1 DNA repair protein RadA Machinery gene
  OG420_RS20945 (OG420_20920) disA 4602114..4603172 (+) 1059 WP_328834341.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG420_RS20950 (OG420_20925) - 4603217..4604047 (-) 831 WP_328933566.1 hypothetical protein -
  OG420_RS20955 (OG420_20930) - 4604430..4605371 (+) 942 WP_328933565.1 A/G-specific adenine glycosylase -
  OG420_RS20960 (OG420_20935) - 4605672..4606211 (+) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG420_RS20965 (OG420_20940) - 4606199..4606888 (+) 690 WP_405880119.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49694.80 Da        Isoelectric Point: 8.0018

>NTDB_id=654977 OG420_RS20940 WP_266769766.1 4600567..4601976(+) (radA/sms) [Streptomyces sp. NBC_00169]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADIGDALRVLPRSRKREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=654977 OG420_RS20940 WP_266769766.1 4600567..4601976(+) (radA/sms) [Streptomyces sp. NBC_00169]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGTACGACCGCCCCCGGCC
GCGTCACCACCTCCGCGGTCCCGATCGGCCAGGTCGACGGCCGTACGGCCACCGCCCGTTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGAGCGGTCGTCCTCGTCGCGGGCGAACCGGGCGTGGGCAAGTCGACCCT
CCTCCTGGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACCGCACGCTCTATGTCACCGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTGCTCATCCTGGACTCCGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGAGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGCCACGCCCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTGGCCGACCCCAGCGGTCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCAG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGATCTGG
CCATCGCGCTCGCCCTGGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCCGAAGCGCACCGTCTGGGCTTCACCCACGCCCTCGT
CCCGAGCGACCCGGGCAAAATCCCGGCGGGCATGAAGGTCATCGAAGTGGCCGACATAGGAGACGCTCTCCGGGTCCTCC
CGCGCTCCCGTAAGCGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409