Detailed information NTG0654904

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG768_RS28350
• Genome accession: NZ_CP108145
• Coordinates: 6399466..6400752 (+)
• Length: 428 a.a.
• NCBI ID: WP_266768669.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00172
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6394466..6405752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG768_RS28320 (OG768_28295)	-	6395537..6395731 (+)	195	WP_026178055.1	hypothetical protein	-
OG768_RS28335 (OG768_28310)	tig	6396333..6397718 (+)	1386	WP_328831437.1	trigger factor	-
OG768_RS28340 (OG768_28315)	clpP	6397973..6398575 (+)	603	WP_033285987.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG768_RS28345 (OG768_28320)	clpP	6398625..6399305 (+)	681	WP_328831439.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG768_RS28350 (OG768_28325)	clpX	6399466..6400752 (+)	1287	WP_266768669.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG768_RS28355 (OG768_28330)	-	6400832..6401839 (-)	1008	WP_328933974.1	hypothetical protein	-
OG768_RS28360 (OG768_28335)	-	6401976..6404600 (+)	2625	WP_328831441.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46841.63 Da
• Isoelectric Point: 4.7360

>NTDB_id=654904 OG768_RS28350 WP_266768669.1 6399466..6400752(+) (clpX) [Streptomyces sp. NBC_00172]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELQSKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=654904 OG768_RS28350 WP_266768669.1 6399466..6400752(+) (clpX) [Streptomyces sp. NBC_00172]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGCCAGGAGTCG
GCGAAGAAGGCGCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGTGGCCAAAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTCGGCCCCACGGGCTCGGGCAAGACCCTCCTCGCCCAGA
CCCTGGCCCGCATGCTGAACGTGCCGTTCGCGATCGCCGACGCGACCGCGCTCACGGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACGGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGAGCGGAGAAGGCGTCCAGCAGGCCC
TGTTGAAGATCCTGGAGGGCACCACGGCCTCCGTCCCGCCGCAGGGCGGCCGGAAACACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAGAAGCTCATCGAGTCCAGGGCCGGCGC
CAAGGGCATCGGCTTCGGGGCGACCATCCGCTCGAAGCGGGAGCTGCAGTCGAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGGCGGCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCACTCGTCAAGCAGTACGAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCGCTCGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGACTGC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGGGTCGTCATCACG
GCGGACGTGGTCCTGTCGAACGTCAACCCGACCCTGATCCCGCGCGACGCACGCGGCCGGGGCCCGGGGGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.189	93.925	0.584
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516