Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L8M16_RS02985 Genome accession   NZ_CP091977
Coordinates   620304..621674 (+) Length   456 a.a.
NCBI ID   WP_011238023.1    Uniprot ID   Q5P2X9
Organism   Aromatoleum aromaticum strain pCyN1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 615304..626674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8M16_RS02960 - 615383..616057 (-) 675 WP_011238018.1 class II aldolase/adducin family protein -
  L8M16_RS02965 mtnA 616054..617142 (-) 1089 WP_011238019.1 S-methyl-5-thioribose-1-phosphate isomerase -
  L8M16_RS02970 - 617270..618427 (+) 1158 WP_011238020.1 pyridoxal phosphate-dependent aminotransferase -
  L8M16_RS02975 - 618478..618723 (+) 246 WP_041646214.1 PP0621 family protein -
  L8M16_RS02980 - 618739..620307 (+) 1569 WP_011238022.1 PAS domain-containing sensor histidine kinase -
  L8M16_RS02985 pilR 620304..621674 (+) 1371 WP_011238023.1 sigma-54 dependent transcriptional regulator Regulator
  L8M16_RS02990 - 621761..622570 (+) 810 WP_168953396.1 DUF3014 domain-containing protein -
  L8M16_RS02995 - 622577..622963 (-) 387 WP_041646217.1 type II toxin-antitoxin system VapC family toxin -
  L8M16_RS03000 - 622960..623193 (-) 234 WP_041646219.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  L8M16_RS03005 - 623369..623803 (-) 435 WP_011238026.1 pilin -
  L8M16_RS03015 - 624298..624582 (+) 285 WP_041646225.1 nucleotidyltransferase family protein -
  L8M16_RS03020 - 624592..624960 (+) 369 WP_011238028.1 DUF86 domain-containing protein -
  L8M16_RS03025 - 624980..625345 (+) 366 WP_197531810.1 nucleotidyltransferase domain-containing protein -
  L8M16_RS03030 - 625390..625821 (+) 432 WP_197531811.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50187.39 Da        Isoelectric Point: 6.1537

>NTDB_id=654814 L8M16_RS02985 WP_011238023.1 620304..621674(+) (pilR) [Aromatoleum aromaticum strain pCyN1]
MNHPERRQRPRIDVLVVDDEEDIREVLELSLMRMGLGCDTVGTIADACRLLGDRAYRLCLTDMRLPDGDGIELVAHIQTQ
QPGLPVAVVTAYGSIETAIRALKAGAFDFVTKPVELKALRELVSHALRLAQPARVAPAVASGRSLIGCSAALAQLRVQVE
KLARNQAPVFIHGESGTGKEVTARLIHELGPRAAGPFVPVNCGAISPELMESEFFGHRKGSFTGAVSDKDGLFQAARGGT
LFLDEVADLPLAMQVKLLRAIQERAVRPVGAHAEESVDVRILSASHRDLAQLVAAGKFRQDLYFRINVITLRVPPLRERP
EDIPELAAHILARLAEREGGAPRRLSAGAAAELQQHAFPGNVRELENLLERACALCDGDEIGVDDVRLYPTTGIGEPLRF
DFGDHSDDERDGDGDDERLRVLRMLDDTRWNRSEAARRLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=654814 L8M16_RS02985 WP_011238023.1 620304..621674(+) (pilR) [Aromatoleum aromaticum strain pCyN1]
ATGAACCACCCCGAACGACGCCAACGCCCCCGCATCGACGTCCTCGTCGTCGACGACGAGGAAGACATCCGCGAAGTGCT
CGAGCTGTCGCTGATGCGCATGGGCCTCGGATGCGACACTGTCGGCACGATCGCCGATGCGTGCCGGCTGCTCGGCGACC
GGGCTTATCGGCTGTGCCTCACGGACATGCGCCTGCCCGATGGCGACGGCATCGAGCTCGTTGCCCACATCCAGACCCAG
CAGCCAGGCCTGCCGGTCGCGGTCGTCACCGCCTACGGCAGCATCGAAACCGCGATCCGCGCGCTCAAGGCCGGCGCTTT
CGACTTCGTCACGAAGCCTGTTGAGCTGAAGGCGCTGCGCGAACTCGTCAGTCACGCTCTCCGGCTTGCGCAGCCGGCCA
GGGTCGCCCCTGCCGTCGCGAGCGGCCGCAGCCTGATCGGGTGCTCCGCGGCGCTCGCGCAGTTGCGCGTGCAGGTCGAA
AAGCTCGCGCGCAACCAGGCGCCGGTGTTTATCCACGGGGAATCCGGCACTGGCAAGGAAGTCACCGCGCGCCTGATCCA
CGAGCTCGGCCCGCGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCTCGCCGGAGCTGATGGAAAGCGAGT
TCTTCGGCCACCGCAAAGGCAGCTTCACCGGCGCGGTGTCGGACAAGGATGGCCTGTTCCAGGCGGCGCGCGGCGGCACG
CTGTTTCTCGACGAAGTAGCCGACCTGCCGCTGGCGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAACGCGCAGTGCG
CCCGGTCGGCGCGCACGCCGAGGAGTCGGTCGATGTGCGCATCCTGTCGGCGTCGCACCGCGACCTCGCGCAGCTCGTCG
CTGCAGGCAAGTTTCGCCAGGACCTGTACTTCCGCATCAACGTCATCACGCTGCGTGTGCCGCCGCTGCGCGAACGCCCC
GAAGACATCCCGGAGCTTGCCGCGCACATCCTCGCCCGGCTCGCCGAGCGCGAAGGCGGTGCGCCTCGTCGCCTGAGCGC
AGGCGCCGCAGCCGAACTCCAGCAGCACGCTTTTCCGGGCAACGTGCGCGAGCTCGAAAATCTTCTCGAACGCGCGTGCG
CGCTGTGCGACGGCGACGAGATCGGCGTCGACGACGTCAGGCTGTACCCGACGACAGGCATCGGCGAGCCGCTGCGCTTC
GACTTCGGCGATCACTCCGACGACGAGCGCGACGGCGACGGCGACGACGAGCGCCTGCGCGTGCTGCGCATGCTCGACGA
CACCCGTTGGAACCGTTCTGAAGCCGCGCGCCGGCTCGGCATGACGCTGCGCCAGCTGCGCTACCGGCTGCAGAAGTGGG
GGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-453)

Response regulator receiver domain (Response_reg)

(14-123)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5P2X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.508

98.026

0.583
  pilR Acinetobacter baumannii strain A118

46.996

100

0.48