Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT61_RS14350 Genome accession   NZ_CP108143
Coordinates   3333249..3334661 (+) Length   470 a.a.
NCBI ID   WP_329038480.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3328249..3339661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT61_RS14330 (OHT61_14315) - 3328350..3329174 (-) 825 WP_329038474.1 sugar phosphate isomerase/epimerase -
  OHT61_RS14335 (OHT61_14320) - 3329346..3330293 (-) 948 WP_329038476.1 Ppx/GppA phosphatase family protein -
  OHT61_RS14340 (OHT61_14325) - 3330326..3331168 (+) 843 WP_329038477.1 hypothetical protein -
  OHT61_RS14345 (OHT61_14330) - 3331320..3333062 (-) 1743 WP_329038478.1 hypothetical protein -
  OHT61_RS14350 (OHT61_14335) radA/sms 3333249..3334661 (+) 1413 WP_329038480.1 DNA repair protein RadA Machinery gene
  OHT61_RS14355 (OHT61_14340) disA 3334742..3335866 (+) 1125 WP_329038482.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT61_RS14360 (OHT61_14345) - 3336056..3336868 (-) 813 WP_329043251.1 hypothetical protein -
  OHT61_RS14365 (OHT61_14350) - 3337129..3338031 (+) 903 WP_327117378.1 A/G-specific adenine glycosylase -
  OHT61_RS14370 (OHT61_14355) - 3338210..3338794 (+) 585 WP_329038485.1 SigE family RNA polymerase sigma factor -
  OHT61_RS14375 (OHT61_14360) - 3338791..3339486 (+) 696 WP_329043253.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49531.62 Da        Isoelectric Point: 8.2515

>NTDB_id=654807 OHT61_RS14350 WP_329038480.1 3333249..3334661(+) (radA/sms) [Streptomyces sp. NBC_00178]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQDDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=654807 OHT61_RS14350 WP_329038480.1 3333249..3334661(+) (radA/sms) [Streptomyces sp. NBC_00178]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGCACGACCGCGGCCG
GCCGGGTCTCCACCGCGGCCCTGCCGATCGGCCAGGTCGACAGCCGCCAGGCCACGGCACGCTCGACCGGGGTCGGCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGTGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTCGCGGCGAAGGCGGCGAGCGACGACCACCGCACGCTCTACGTCACCGCCGAGGAGTCGGCGAGCC
AGGTGCGCATGCGGGCCGACCGCATCCGCGCGATCAACGACCACCTCTACCTGGCAGCCGAGACCGACCTCTCCGCCGTC
CTGGGGCATCTGGACGCGGTCAAGCCCTCCCTGCTGGTCCTCGACTCCGTGCAGACGGTCGCCTCACCGGAGATCGACGG
CGCGCCCGGCGGGATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTCATCAGGGCGTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCGGGACCGAGGCTGCTGGAGCACCTCGTCGACGTCGTCCTGTCC
TTCGAGGGCGACCGGCACGCGCGCCTCAGGCTCGTGCGCGGCGTCAAGAACAGGTACGGCGCCACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGATCCGTCGGGGCTCTTCCTGACCCGGCGCGACGAACCCGTGC
CCGGCACCTGCCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCGTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCAGGGTCTCGATGATGCTGGCGGTCCTCGAACAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCCACGGTGGGCGGCGTGAAGCTCACCGAGCCGGCCGCGGACC
TCGCGATCGCGCTGGCGCTGGCCAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGC
CTCGCGGGCGAGGTCAGGAGGGTGACGGGGGTGCAGCGCAGACTGGCCGAGGCCTACCGTCTGGGGTTCAAGCACGCCCT
GGTTCCGAGGGACCCGGGACAGGTTCCCGCGGGCATGAAGGTCACGGAGGTCGCCGACATGGGAGACGCTCTGAGAGTCC
TTCCGCGCCGGTCTCGCCCGGACGGACCACAGGACGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

41.943

96.383

0.404
  radA Streptococcus pneumoniae D39

41.943

96.383

0.404
  radA Streptococcus pneumoniae R6

41.943

96.383

0.404
  radA Streptococcus pneumoniae TIGR4

41.943

96.383

0.404
  radA Streptococcus mitis SK321

43.357

91.277

0.396
  radA Streptococcus mitis NCTC 12261

43.357

91.277

0.396