Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   L3V77_RS14305 Genome accession   NZ_CP091975
Coordinates   3135791..3136402 (+) Length   203 a.a.
NCBI ID   WP_275134740.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130791..3141402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS14280 (L3V77_14265) panC 3131222..3132094 (+) 873 WP_275134736.1 pantoate--beta-alanine ligase -
  L3V77_RS14285 (L3V77_14270) - 3132212..3132982 (-) 771 WP_275134737.1 ABC transporter permease -
  L3V77_RS14290 (L3V77_14275) - 3132989..3133906 (-) 918 WP_275134738.1 ABC transporter ATP-binding protein -
  L3V77_RS14295 (L3V77_14280) can 3134168..3134824 (+) 657 WP_195704254.1 carbonate dehydratase -
  L3V77_RS14300 (L3V77_14285) hpt 3134917..3135447 (-) 531 WP_275134739.1 hypoxanthine phosphoribosyltransferase -
  L3V77_RS14305 (L3V77_14290) opaR 3135791..3136402 (+) 612 WP_275134740.1 TetR/AcrR family transcriptional regulator Regulator
  L3V77_RS14310 (L3V77_14295) lpdA 3136507..3137931 (-) 1425 WP_275134741.1 dihydrolipoyl dehydrogenase -
  L3V77_RS14315 (L3V77_14300) aceF 3138201..3140081 (-) 1881 WP_275134742.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23728.99 Da        Isoelectric Point: 6.0795

>NTDB_id=654794 L3V77_RS14305 WP_275134740.1 3135791..3136402(+) (opaR) [Vibrio sp. DW001]
MDMIKKHPRTRLSPQKRKLQLMDIALDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLHHVVRQFSAFLN
ENIDTSLHAKENLKNTADNMCELVLQNEHWLKVWFEWSASARDEVWPLYVSLNKNSRLLVENMFSQSIERGEICENQNPE
NLAKMFHAICYAIYLEANRNNDKQHLDQFTDSFLNMLCIYKED

Nucleotide


Download         Length: 612 bp        

>NTDB_id=654794 L3V77_RS14305 WP_275134740.1 3135791..3136402(+) (opaR) [Vibrio sp. DW001]
ATGGACATGATAAAGAAACATCCTCGGACTCGTTTGTCCCCGCAAAAACGTAAATTGCAGTTAATGGATATTGCATTAGA
CGTTTTTGCCCGTCGTGGTATAGGCCGTGGTGGCCACGCCGATATAGCTGAAATTGCACAAGTTTCAGTTGCTACGGTTT
TCAACTATTTCCCTACAAGAGAAGACCTCGTCGACGAGGTATTACACCATGTTGTGCGTCAATTTTCTGCTTTTCTCAAT
GAGAATATAGATACCTCTTTACATGCTAAAGAGAATCTTAAAAACACAGCAGATAATATGTGTGAACTGGTATTACAAAA
TGAGCACTGGTTAAAAGTATGGTTTGAATGGAGTGCATCAGCTCGCGATGAAGTGTGGCCGCTTTATGTTTCTCTTAATA
AAAACAGTCGACTATTAGTAGAAAACATGTTTTCCCAATCTATTGAACGTGGAGAAATATGTGAAAATCAAAACCCTGAA
AACCTGGCTAAAATGTTTCACGCCATCTGTTACGCTATCTATTTAGAAGCGAATCGTAACAATGATAAACAGCATCTTGA
TCAGTTCACCGATAGTTTTTTAAATATGCTTTGTATCTATAAAGAAGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

66.502

100

0.665
  hapR Vibrio cholerae C6706

64.141

97.537

0.626
  hapR Vibrio cholerae strain A1552

64.141

97.537

0.626