Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG778_RS13890 Genome accession   NZ_CP108137
Coordinates   3216975..3218387 (+) Length   470 a.a.
NCBI ID   WP_219572035.1    Uniprot ID   A0ABY9IVR4
Organism   Streptomyces sp. NBC_00184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3211975..3223387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG778_RS13875 (OG778_13880) - 3212848..3213798 (-) 951 WP_306070605.1 Ppx/GppA phosphatase family protein -
  OG778_RS13880 (OG778_13885) - 3213883..3214722 (+) 840 WP_328949209.1 hypothetical protein -
  OG778_RS13885 (OG778_13890) - 3214814..3216790 (-) 1977 WP_328949210.1 hypothetical protein -
  OG778_RS13890 (OG778_13895) radA/sms 3216975..3218387 (+) 1413 WP_219572035.1 DNA repair protein RadA Machinery gene
  OG778_RS13895 (OG778_13900) disA 3218512..3219636 (+) 1125 WP_114245192.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG778_RS13900 (OG778_13905) - 3219758..3220582 (-) 825 WP_328949211.1 hypothetical protein -
  OG778_RS13905 (OG778_13910) - 3220921..3221823 (+) 903 WP_219575455.1 A/G-specific adenine glycosylase -
  OG778_RS13910 (OG778_13915) - 3222029..3222673 (+) 645 WP_219572036.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49422.53 Da        Isoelectric Point: 8.2515

>NTDB_id=654733 OG778_RS13890 WP_219572035.1 3216975..3218387(+) (radA/sms) [Streptomyces sp. NBC_00184]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRMRADRIGAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEDGVRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=654733 OG778_RS13890 WP_219572035.1 3216975..3218387(+) (radA/sms) [Streptomyces sp. NBC_00184]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACGGCGGCCG
GCCGCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTAGACAGCCGCCAGGCCACCGCCCGCTCGACGGGCGTGGGTGAG
CTGGACCGTGTGCTGGGCGGCGGCCTGGTGCCCGGTGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTGGGGAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCCGCGAGCGACGAGCACCGCACTTTGTACGTCACGGCGGAGGAGTCCGCCAGCC
AGGTCAGGATGCGTGCCGACCGGATCGGGGCGATCAACGACCATCTGTACCTGGCCGCCGAGACGGATCTGTCAGCGGTC
CTCGGCCACCTGGACGCGGTCAAACCGTCCCTGCTCGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGAGGG
CGCGCCCGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCGACCC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCG
TTCGAGGGCGACCGGCATGCCAGGCTCCGGCTCGTACGCGGCGTCAAGAACCGCTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGTCCGCTGGTCGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAG
ATCCCTTCGCCCCGACGCACCACTTCGGGGCTCGAGACGTCCCGGGTATCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAACGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTCTCCGAACCGGCCGCGGACC
TCGCGATCGCGCTCGCCCTGGCCAGCGCGGCCAGCGACACACCCCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGGCGGGTCACCGGGGTCCAGCGCAGACTGGCCGAGGCGTACCGTCTGGGCTTCACGCACGCCTT
GGTCCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCAACATGGGCGATGCGCTCAGGGTGC
TCCCGCGCCGCTCTCGCGCACAGGCCCCACAGGAGGACGGCGTACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4