Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG429_RS21780 Genome accession   NZ_CP108131
Coordinates   4513582..4514982 (-) Length   466 a.a.
NCBI ID   WP_328926972.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4508582..4519982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS21755 (OG429_21780) - 4508966..4509526 (-) 561 WP_319727094.1 SigE family RNA polymerase sigma factor -
  OG429_RS21760 (OG429_21785) - 4509734..4510642 (-) 909 WP_328926968.1 A/G-specific adenine glycosylase -
  OG429_RS21765 (OG429_21790) - 4510639..4511280 (-) 642 WP_328926969.1 phosphatase PAP2 family protein -
  OG429_RS21770 (OG429_21795) - 4511441..4512265 (+) 825 WP_328926970.1 hypothetical protein -
  OG429_RS21775 (OG429_21800) disA 4512297..4513421 (-) 1125 WP_328926971.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG429_RS21780 (OG429_21805) radA/sms 4513582..4514982 (-) 1401 WP_328926972.1 DNA repair protein RadA Machinery gene
  OG429_RS21785 (OG429_21810) - 4515165..4516925 (+) 1761 WP_328926973.1 hypothetical protein -
  OG429_RS21790 (OG429_21815) - 4516949..4517737 (-) 789 WP_328930367.1 hypothetical protein -
  OG429_RS21795 (OG429_21820) - 4517882..4518820 (+) 939 WP_328926974.1 Ppx/GppA phosphatase family protein -
  OG429_RS21800 (OG429_21825) - 4518922..4519773 (+) 852 WP_328926975.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 48851.97 Da        Isoelectric Point: 8.2598

>NTDB_id=654673 OG429_RS21780 WP_328926972.1 4513582..4514982(-) (radA/sms) [Streptomyces sp. NBC_00190]
MAARTARSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGTPAVRTTAAGRVSTAAVPIAQVDSRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRINALNDHLYLAAETDLSA
VLGHLDAVRPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVVEVADMGDALRVLPRGRSRTPAKE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=654673 OG429_RS21780 WP_328926972.1 4513582..4514982(-) (radA/sms) [Streptomyces sp. NBC_00190]
ATGGCTGCCCGCACTGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGACGACGGCGAA
ATGGCTCGGGCGGTGTCCCGAATGCCAGGCGTGGGGCACCGTCGAGGAAATGGGCACGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTGTCGACCGCCGCGGTGCCGATCGCGCAGGTCGACAGCCGGACGGCGACCGCGCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTACTCGGCGGCGGGCTCGTGCCCGGCGCCGTGGTGCTGCTCGCCGGGGAGCCCGGCGTGGGCAAGTC
GACGCTGCTGCTGGACGTCGCCGCGAAGGCCGCCAGCGATGCGCACCGCACCCTGTACGTCACGGGCGAGGAGAGCGCGA
GCCAGGTGCGGCTGCGCGCCGACCGGATCAACGCGCTGAACGACCACCTCTACCTGGCCGCCGAAACCGACCTGTCCGCC
GTACTGGGACACCTGGACGCGGTGCGGCCCTCCCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGA
CGGCGCGCCCGGCGGCATGGCTCAGGTGCGCGAGGTCGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCA
CGCTCCTCGTCGGCCACGTGACGAAGGACGGGGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTCGTGCGCGGCGTCAAGAACCGGTACGGGGCCACCGACGAGGTGGG
CTGCTTCGAACTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCCG
TGCCCGGGACCTGCCTGACCGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCGCGGCGCACCACGTCGGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGGCGGATCACCGCGCTGGGCAAGCGCGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCCGCCGCCAGCGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGGGAGGTC
GGCCTCGCGGGTGAGGTGCGGCGGGTGACCGGCGTACAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGCTTCACGCACGC
CCTCGTGCCCTCGGATCCGGGCAAGGTGCCCGCCGGGATGAAGGTCGTCGAGGTGGCCGACATGGGCGACGCGCTACGGG
TGCTGCCGCGCGGCCGTTCCCGTACTCCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

AAA domain (AAA_25)

(83-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

97.21

0.427
  radA Streptococcus pneumoniae Rx1

43.142

96.996

0.418
  radA Streptococcus pneumoniae D39

43.142

96.996

0.418
  radA Streptococcus pneumoniae R6

43.142

96.996

0.418
  radA Streptococcus pneumoniae TIGR4

43.142

96.996

0.418
  radA Streptococcus mitis SK321

44.626

91.845

0.41
  radA Streptococcus mitis NCTC 12261

44.626

91.845

0.41