Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG429_RS20935 Genome accession   NZ_CP108131
Coordinates   4330790..4331389 (+) Length   199 a.a.
NCBI ID   WP_030010802.1    Uniprot ID   A0ABS4LCH5
Organism   Streptomyces sp. NBC_00190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4325790..4336389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS20910 (OG429_20935) - 4326294..4327652 (+) 1359 WP_328926820.1 aspartate aminotransferase family protein -
  OG429_RS20915 (OG429_20940) - 4327814..4328482 (+) 669 WP_328926821.1 GntR family transcriptional regulator -
  OG429_RS20920 (OG429_20945) - 4328626..4329276 (+) 651 WP_328926822.1 hypothetical protein -
  OG429_RS20925 (OG429_20950) - 4329387..4330133 (-) 747 WP_328926823.1 SLATT domain-containing protein -
  OG429_RS20930 (OG429_20955) - 4330402..4330746 (+) 345 WP_078892798.1 YbaB/EbfC family nucleoid-associated protein -
  OG429_RS20935 (OG429_20960) recR 4330790..4331389 (+) 600 WP_030010802.1 recombination mediator RecR Machinery gene
  OG429_RS20940 (OG429_20965) - 4331382..4332029 (+) 648 WP_328926824.1 DUF5063 domain-containing protein -
  OG429_RS20945 (OG429_20970) - 4332152..4333426 (+) 1275 WP_328926825.1 aspartate kinase -
  OG429_RS20950 (OG429_20975) - 4333423..4334496 (+) 1074 WP_328926826.1 aspartate-semialdehyde dehydrogenase -
  OG429_RS20955 (OG429_20980) - 4334666..4335448 (+) 783 WP_328926827.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21843.18 Da        Isoelectric Point: 5.0142

>NTDB_id=654668 OG429_RS20935 WP_030010802.1 4330790..4331389(+) (recR) [Streptomyces sp. NBC_00190]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654668 OG429_RS20935 WP_030010802.1 4330790..4331389(+) (recR) [Streptomyces sp. NBC_00190]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGACGCCTCGCGCACGCGCTGCTCGAGGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAACGGTGCGGCATCTGCCGTGACCCGCGCCGCGACACCACGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGAGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAA
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472