Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG429_RS13760 Genome accession   NZ_CP108131
Coordinates   2819497..2821230 (+) Length   577 a.a.
NCBI ID   WP_328925615.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2814497..2826230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS13725 (OG429_13760) - 2814537..2814740 (-) 204 WP_328925611.1 DNA-binding protein -
  OG429_RS13730 (OG429_13765) - 2814912..2816783 (+) 1872 WP_328925612.1 site-specific integrase -
  OG429_RS13750 (OG429_13785) - 2817502..2817801 (+) 300 WP_328925613.1 YtxH domain-containing protein -
  OG429_RS13755 (OG429_13790) - 2817851..2819299 (+) 1449 WP_328925614.1 FGGY family carbohydrate kinase -
  OG429_RS13760 (OG429_13795) rcrP 2819497..2821230 (+) 1734 WP_328925615.1 ABC transporter ATP-binding protein Regulator
  OG429_RS13765 (OG429_13800) rcrQ 2821227..2823149 (+) 1923 WP_328925616.1 ABC transporter ATP-binding protein Regulator
  OG429_RS13770 (OG429_13805) rpoS 2823254..2824384 (-) 1131 WP_328925617.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62551.66 Da        Isoelectric Point: 5.1673

>NTDB_id=654646 OG429_RS13760 WP_328925615.1 2819497..2821230(+) (rcrP) [Streptomyces sp. NBC_00190]
MLIRLLRTHLGQYQKPIALLVLLQLLQTSATLYLPTLNADIIDTGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRSTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVMALSLDVKLSGV
LLAVVPVLGLSVGAIVLKTRPLFRLMQARLDTVNRVLREQITGNRVIRAFVRDTYEKDRFREANEDLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSNGMEIGQLTAFLAYLLQIVMAVMMATFMFMMVPRAEVCAERVQEVLDTRSSVVP
PADPVRELARRGLLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLEPELLARTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWRALEVAQAKDFVSELEGGLEAPIAQGGTNVSGGQRQRL
AIARALVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654646 OG429_RS13760 WP_328925615.1 2819497..2821230(+) (rcrP) [Streptomyces sp. NBC_00190]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCAGTACCAAAAACCCATCGCCCTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCGACCCTCTATCTGCCCACCCTCAACGCGGACATCATCGACACCGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGTGCGCTGATGCTCGGTGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGCGCCGTCTACTACGGAGCC
CGCACGGCGGCGGCCTTCGGGCGGGACGTGCGCGCCGCCGTCTTCGACCGTGTCCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGGGCCCCGTCCCTGATCACCCGTTCGACGAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTGGGCGGGATCGTCATGGCGCTGTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTCGCCGTCGTTCCCGTGCTCGGTCTGTCGGTCGGCGCCATCGTCCTCAAGACGCGGCCGCTGTTCCGCCTGATGCA
GGCCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACA
CGTACGAGAAGGATCGTTTCCGGGAGGCCAACGAGGACCTCACCGGGGTCTCGCTGGCCGCCGGCAAGCTCCTCGCCCTG
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTCGACAGCAA
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGCTGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCCGTTCCAGCGTGGTCCCG
CCGGCCGACCCGGTCCGCGAGCTCGCCCGGCGCGGGCTCCTCGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACCCTGCTGGGCCTGGTCCCGCGGCTGTTCGACGCGACCGGCGGCGATGTGCTGGTCGACGGCGAGGACGTACGC
CGGCTCGAACCGGAACTGCTCGCCAGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGCTACGGCCGCCCGGACGCGAGCGACGAAGAGCTGTGGCGGGCCTTGGAGGTGGCCCAGGCGAAGGACTTCG
TGTCCGAGCTGGAGGGTGGCCTGGAGGCTCCCATCGCCCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCGCCCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCACTCGCCCGCGAGACCGAGGACGCGACCGTGGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTGGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.892

93.241

0.381