Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG429_RS08755 Genome accession   NZ_CP108131
Coordinates   1777838..1778464 (+) Length   208 a.a.
NCBI ID   WP_328924734.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772838..1783464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS08735 (OG429_08765) - 1774129..1774746 (-) 618 WP_328924730.1 vitamin K epoxide reductase family protein -
  OG429_RS08740 (OG429_08770) - 1774884..1775762 (+) 879 WP_328924731.1 ABC transporter ATP-binding protein -
  OG429_RS08745 (OG429_08775) - 1775759..1776628 (+) 870 WP_328924732.1 ABC transporter permease -
  OG429_RS08750 (OG429_08780) - 1776625..1777824 (+) 1200 WP_328924733.1 sensor histidine kinase -
  OG429_RS08755 (OG429_08785) vraR 1777838..1778464 (+) 627 WP_328924734.1 response regulator transcription factor Regulator
  OG429_RS08760 (OG429_08790) hisS 1778522..1779784 (-) 1263 WP_328924735.1 histidine--tRNA ligase -
  OG429_RS08765 (OG429_08795) - 1779795..1780517 (-) 723 WP_328924736.1 MBL fold metallo-hydrolase -
  OG429_RS08770 (OG429_08800) - 1780670..1781452 (+) 783 WP_328924737.1 peptidylprolyl isomerase -
  OG429_RS08775 (OG429_08805) - 1781648..1782877 (+) 1230 WP_328924738.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22297.86 Da        Isoelectric Point: 6.3507

>NTDB_id=654637 OG429_RS08755 WP_328924734.1 1777838..1778464(+) (vraR) [Streptomyces sp. NBC_00190]
MIRILLADDHPVVREGLRGMLSAEPDLEVVAEAANGPQAEALAARLVPALDLILMDLRMPGGDGVESIARITAAGLPVRV
VVLTTYENDRDILRAVEAGAAGYLLKDMARAELAEAVRAAVRGETVLAPSVAGRLVDHLRTRPERPHLSEREVSVLRLVA
EGATNAEIGRRLFVAESTVKTHLLRAFAKLEVADRTAAVTTAMRHGLL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=654637 OG429_RS08755 WP_328924734.1 1777838..1778464(+) (vraR) [Streptomyces sp. NBC_00190]
ATGATCCGCATCCTGCTGGCCGACGACCACCCGGTGGTACGGGAGGGCCTGCGCGGCATGCTCAGCGCCGAGCCGGACCT
GGAGGTCGTCGCGGAGGCCGCCAACGGTCCGCAGGCCGAAGCCCTGGCCGCGCGGCTGGTGCCCGCCCTGGACCTGATCC
TGATGGACCTGCGGATGCCCGGCGGCGACGGGGTGGAGTCCATCGCCCGCATCACCGCGGCCGGGCTGCCGGTCCGGGTG
GTGGTGCTGACCACGTACGAGAACGACCGCGACATCCTGCGCGCGGTGGAGGCGGGCGCGGCGGGCTACCTGCTGAAGGA
CATGGCCCGTGCGGAACTGGCGGAGGCGGTCCGCGCGGCCGTCCGCGGCGAGACCGTCCTGGCCCCGTCGGTCGCGGGCC
GCCTGGTCGACCACCTGCGCACCCGCCCGGAGCGGCCGCACCTGTCGGAGCGCGAGGTATCGGTCCTGCGCCTGGTCGCG
GAGGGCGCGACGAACGCGGAGATCGGCCGCCGCCTGTTCGTGGCGGAGTCCACGGTCAAGACCCACCTGCTGCGGGCCTT
CGCGAAGCTGGAGGTCGCGGACCGCACGGCGGCGGTGACGACGGCCATGCGGCACGGCCTGCTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.346

100

0.413
  degU Bacillus subtilis subsp. subtilis str. 168

35.111

100

0.38