Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG429_RS07535 Genome accession   NZ_CP108131
Coordinates   1524984..1525634 (+) Length   216 a.a.
NCBI ID   WP_328924520.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519984..1530634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS07510 (OG429_07540) mug 1520960..1521508 (+) 549 WP_328930189.1 G/U mismatch-specific DNA glycosylase -
  OG429_RS07515 (OG429_07545) - 1521525..1521962 (-) 438 WP_328924516.1 hypothetical protein -
  OG429_RS07520 (OG429_07550) - 1522003..1522752 (-) 750 WP_328924517.1 ABC transporter permease -
  OG429_RS07525 (OG429_07555) - 1522781..1523692 (-) 912 WP_328924518.1 ATP-binding cassette domain-containing protein -
  OG429_RS07530 (OG429_07560) - 1523801..1524979 (+) 1179 WP_328924519.1 histidine kinase -
  OG429_RS07535 (OG429_07565) vraR 1524984..1525634 (+) 651 WP_328924520.1 response regulator transcription factor Regulator
  OG429_RS07540 (OG429_07570) - 1525736..1526893 (+) 1158 WP_328924521.1 ROK family transcriptional regulator -
  OG429_RS07545 (OG429_07575) - 1527087..1527857 (-) 771 WP_328924522.1 GntR family transcriptional regulator -
  OG429_RS07550 (OG429_07580) - 1528146..1529000 (+) 855 WP_328924523.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23313.97 Da        Isoelectric Point: 4.9855

>NTDB_id=654634 OG429_RS07535 WP_328924520.1 1524984..1525634(+) (vraR) [Streptomyces sp. NBC_00190]
MPVTVLLVDDEPLVRAGLRAVLESQPDIEVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGIEATRTVLRTVDSPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAQYGNRKARAALEQAALTEREESV
LRLMARGLTNVEIARELIIGVETVKSHVSAVLTKLGARDRTQAVITAYESGFVAPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=654634 OG429_RS07535 WP_328924520.1 1524984..1525634(+) (vraR) [Streptomyces sp. NBC_00190]
ATGCCGGTTACCGTACTGCTCGTCGATGACGAACCCCTGGTGCGCGCGGGTCTGCGCGCCGTCCTGGAGTCCCAGCCCGA
CATCGAAGTGGTGGGTGAGGCGGCCGACGGGGCCTCGGTCGTCCCGCTCGTGCGGCAACTGCGGCCCGACGTGGTGGCGA
TGGATGTGCGGATGCCGCTGCTCGACGGGATCGAGGCGACGCGGACGGTCCTGCGGACGGTGGACTCGCCGCCGAAGATC
CTCGTGGTGACCACCTTCGAGAACGACGAGTACGTCTACGAGGCGCTGCGGGCCGGTGCGGACGGGTTCCTGCTCAAGCG
GGCGCGGCCTTCGGAGATCGTGCACGCGGTGCGGCTGGTGGCGGAGGGCGAGACGCTGCTCTTCCCGGCCGCCGTGCGGG
CGCTGGCCGCGCAGTACGGCAATCGGAAGGCCCGGGCGGCGCTGGAGCAGGCTGCCCTGACCGAGCGGGAGGAATCGGTG
CTGCGGCTCATGGCCCGGGGGCTGACCAACGTGGAGATCGCGCGCGAGCTGATCATCGGCGTCGAGACGGTGAAGTCACA
TGTCAGCGCGGTCCTGACGAAGCTGGGGGCGCGGGACCGGACCCAGGCGGTGATCACGGCGTACGAGTCGGGGTTCGTCG
CCCCGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.056

99.074

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

34.667

100

0.361