Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT93_RS26285 Genome accession   NZ_CP108130
Coordinates   5736228..5736878 (-) Length   216 a.a.
NCBI ID   WP_406273745.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5731228..5741878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS26265 (OHT93_26220) atpD 5731504..5732946 (+) 1443 WP_406273738.1 F0F1 ATP synthase subunit beta -
  OHT93_RS26270 (OHT93_26225) - 5733143..5733517 (+) 375 WP_266487479.1 F0F1 ATP synthase subunit epsilon -
  OHT93_RS26275 (OHT93_26230) - 5733651..5734100 (+) 450 WP_266487480.1 DUF2550 domain-containing protein -
  OHT93_RS26280 (OHT93_26235) - 5734215..5736068 (-) 1854 WP_406273742.1 glycosyl hydrolase family 18 protein -
  OHT93_RS26285 (OHT93_26240) vraR 5736228..5736878 (-) 651 WP_406273745.1 response regulator Regulator
  OHT93_RS26290 (OHT93_26245) - 5736875..5738269 (-) 1395 WP_406273748.1 sensor histidine kinase -
  OHT93_RS26295 (OHT93_26250) - 5738262..5738837 (+) 576 WP_406273751.1 hypothetical protein -
  OHT93_RS26300 (OHT93_26260) - 5738959..5739531 (-) 573 WP_266487485.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHT93_RS26305 (OHT93_26265) - 5739739..5740587 (+) 849 WP_266487486.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OHT93_RS26310 (OHT93_26270) - 5740761..5741084 (+) 324 WP_266487487.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23201.91 Da        Isoelectric Point: 4.5721

>NTDB_id=654602 OHT93_RS26285 WP_406273745.1 5736228..5736878(-) (vraR) [Streptomyces sp. NBC_00191]
MTIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEEAVRLARELCPDLVLMDIQMPRLDGVSATRQVVSEQLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTDAADLLQAVRTVARGEGLIAPAVTRRLIAEFAAPTPVRRPDAPDPAMLDVLTRR
EREVLSCVGEGLSNAEIAVRLDMAEATVKTHMSRLLGKLELRSRVQAAVLAQELGI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=654602 OHT93_RS26285 WP_406273745.1 5736228..5736878(-) (vraR) [Streptomyces sp. NBC_00191]
ATGACGATCCGGGTACTGGTCGCGGAGGACCAGAGCGCCGTACGCGCCGGTCTGGTCCTCATCCTGCGCAGCGCACCGGA
CATCGAGGTCGTGGGCGAGGCGGCGGACGGCGAGGAAGCGGTGCGGCTGGCCCGCGAACTGTGTCCGGATCTGGTGCTGA
TGGACATTCAGATGCCGCGTCTGGACGGGGTGTCGGCCACCCGGCAGGTTGTCTCGGAGCAGCTGGCCGACGTACTCGTA
CTGACCACCTTCGATCTGGACGAGTACGTCTTCGGGGCGCTGCGCGCGGGCGCCGCGGGCTTTCTGCTGAAGAACACCGA
CGCGGCGGATCTGCTGCAGGCGGTACGCACGGTGGCGCGCGGCGAGGGTCTGATCGCGCCGGCCGTCACGCGCCGTCTGA
TCGCGGAGTTCGCCGCACCGACGCCCGTACGCAGACCGGACGCGCCCGACCCCGCGATGCTCGATGTGCTCACCCGGCGC
GAGCGCGAGGTGCTGTCGTGCGTCGGCGAGGGCTTGTCGAACGCCGAGATCGCCGTACGTCTCGACATGGCGGAGGCGAC
GGTGAAGACCCATATGAGCAGGCTGCTGGGCAAGCTGGAGCTGCGCAGCAGGGTCCAAGCGGCAGTCTTGGCACAGGAGT
TGGGTATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

39.462

100

0.407