Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHT93_RS20695 Genome accession   NZ_CP108130
Coordinates   4559981..4560580 (+) Length   199 a.a.
NCBI ID   WP_266479960.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4554981..4565580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS20675 (OHT93_20620) - 4556450..4557100 (+) 651 WP_406271319.1 hypothetical protein -
  OHT93_RS20680 (OHT93_20625) - 4557174..4558115 (+) 942 WP_406271322.1 class I SAM-dependent methyltransferase -
  OHT93_RS20685 (OHT93_20630) - 4558564..4559298 (-) 735 WP_389372950.1 SLATT domain-containing protein -
  OHT93_RS20690 (OHT93_20635) - 4559590..4559925 (+) 336 WP_405600317.1 YbaB/EbfC family nucleoid-associated protein -
  OHT93_RS20695 (OHT93_20640) recR 4559981..4560580 (+) 600 WP_266479960.1 recombination mediator RecR Machinery gene
  OHT93_RS20700 (OHT93_20645) - 4560573..4561232 (+) 660 WP_406271327.1 DUF5063 domain-containing protein -
  OHT93_RS20705 (OHT93_20650) - 4561476..4562747 (+) 1272 WP_266479957.1 aspartate kinase -
  OHT93_RS20710 (OHT93_20655) - 4562744..4563814 (+) 1071 WP_406271331.1 aspartate-semialdehyde dehydrogenase -
  OHT93_RS20715 (OHT93_20660) - 4564253..4564828 (+) 576 WP_406279633.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21879.18 Da        Isoelectric Point: 5.3854

>NTDB_id=654587 OHT93_RS20695 WP_266479960.1 4559981..4560580(+) (recR) [Streptomyces sp. NBC_00191]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCNICRDPRRDHSV
ICAVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTITELIIATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654587 OHT93_RS20695 WP_266479960.1 4559981..4560580(+) (recR) [Streptomyces sp. NBC_00191]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACCGACGTACGCCGGCTCGCCCACGCGCTGCTCGAGGTGAAGGACAAGGTCC
GCTTCTGTGCGGTGTGCGGCAATGTCGCGCAGCAGGAACAGTGCAACATCTGCCGTGACCCGCGCCGCGACCACTCGGTC
ATCTGCGCGGTGGAGGAACCGAAGGACGTCGTCGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGCTATCACGTGCTCGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATCCGTGAGCTGCTGGCCCGCCTCGCGGACGGCA
CGATCACGGAGCTGATCATCGCCACGGATCCCAATCTCGAGGGCGAAGCCACCGCCACGTACCTGGCGCGCATGATCAAG
CCGATGGGCCTGAAGGTCACAAGACTGGCCAGCGGTCTGCCCGTGGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
GGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452