Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT93_RS10635 Genome accession   NZ_CP108130
Coordinates   2311191..2311868 (-) Length   225 a.a.
NCBI ID   WP_405596798.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2306191..2316868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS10610 (OHT93_10580) - 2306351..2308453 (+) 2103 WP_406266854.1 ATP-binding protein -
  OHT93_RS10615 (OHT93_10585) - 2308504..2309445 (+) 942 WP_406266857.1 glycoside hydrolase family 16 protein -
  OHT93_RS10620 (OHT93_10590) - 2309632..2310468 (+) 837 WP_406266860.1 helix-turn-helix domain-containing protein -
  OHT93_RS10625 (OHT93_10595) - 2310465..2310713 (+) 249 WP_406266863.1 DUF397 domain-containing protein -
  OHT93_RS10630 (OHT93_10600) - 2310730..2311173 (+) 444 WP_406266866.1 VOC family protein -
  OHT93_RS10635 (OHT93_10605) vraR 2311191..2311868 (-) 678 WP_405596798.1 response regulator Regulator
  OHT93_RS10640 (OHT93_10610) - 2311865..2313088 (-) 1224 WP_406266869.1 sensor histidine kinase -
  OHT93_RS10645 (OHT93_10615) - 2313388..2315550 (+) 2163 WP_406266872.1 MMPL family transporter -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24633.41 Da        Isoelectric Point: 5.1748

>NTDB_id=654566 OHT93_RS10635 WP_405596798.1 2311191..2311868(-) (vraR) [Streptomyces sp. NBC_00191]
MSIRVVVVDDQALVRRGFVMILRVHDDIEVMAEAGTGLEAVEAARKHRPDVILMDIRMPGMDGIEATSRILREADWDVRV
LILTTFDPDEYVYKALRAGASAFVLKDIPPEELATAVRTVAEGGALLAPSITRRLIDQFAERRVVNTTVAGRLERLTERE
LEIVVAAARGASNSEIAAQLFIGPATVKSHVSSILTKLGLRDRIQIVIFAYESGLVEAGDHDVGH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=654566 OHT93_RS10635 WP_405596798.1 2311191..2311868(-) (vraR) [Streptomyces sp. NBC_00191]
GTGAGCATCCGTGTCGTTGTCGTGGACGACCAGGCGCTGGTCCGCCGGGGCTTCGTCATGATCCTGAGGGTCCACGACGA
CATCGAGGTCATGGCCGAGGCCGGGACCGGACTCGAAGCCGTCGAGGCGGCACGCAAGCATCGTCCGGACGTGATCCTCA
TGGACATCCGCATGCCCGGCATGGACGGCATCGAGGCCACCTCCCGGATCCTGCGGGAGGCGGACTGGGACGTGCGGGTC
CTGATCCTGACCACGTTCGATCCGGACGAGTACGTCTACAAGGCGCTGCGTGCCGGTGCCAGCGCCTTCGTGCTCAAGGA
CATTCCCCCCGAGGAGCTCGCCACCGCCGTGCGCACCGTGGCCGAGGGCGGGGCGCTGCTGGCACCGTCGATCACCCGGC
GCCTCATCGACCAGTTCGCGGAGCGACGTGTCGTCAACACCACCGTGGCGGGCCGCCTGGAGCGACTCACCGAGCGCGAA
CTCGAGATCGTGGTCGCCGCCGCGCGGGGCGCGAGCAACTCGGAGATCGCCGCCCAGCTCTTCATCGGGCCCGCCACCGT
CAAGTCGCACGTGTCGAGCATTCTCACCAAACTCGGTCTGCGTGACCGCATCCAGATCGTGATCTTCGCCTACGAGAGCG
GGCTCGTCGAAGCGGGCGACCACGACGTCGGTCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.553

96.444

0.391
  degU Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387