Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT93_RS08560 Genome accession   NZ_CP108130
Coordinates   1859136..1859753 (+) Length   205 a.a.
NCBI ID   WP_406279292.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854136..1864753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS08540 (OHT93_08505) - 1855537..1856307 (+) 771 WP_406265917.1 IclR family transcriptional regulator -
  OHT93_RS08545 (OHT93_08510) - 1856308..1856784 (+) 477 WP_406265920.1 GNAT family N-acetyltransferase -
  OHT93_RS08550 (OHT93_08515) - 1856864..1857853 (+) 990 WP_406265923.1 hypothetical protein -
  OHT93_RS08555 (OHT93_08520) - 1857850..1859100 (+) 1251 WP_406265926.1 sensor histidine kinase -
  OHT93_RS08560 (OHT93_08525) vraR 1859136..1859753 (+) 618 WP_406279292.1 response regulator Regulator
  OHT93_RS08565 (OHT93_08530) - 1859857..1861308 (+) 1452 WP_406265929.1 peptidoglycan D,D-transpeptidase FtsI family protein -
  OHT93_RS08570 (OHT93_08535) - 1861337..1862743 (-) 1407 WP_406265932.1 NCS2 family permease -
  OHT93_RS08575 (OHT93_08540) araD 1862917..1864656 (-) 1740 WP_406265935.1 L-arabinonate dehydratase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21873.16 Da        Isoelectric Point: 4.9394

>NTDB_id=654559 OHT93_RS08560 WP_406279292.1 1859136..1859753(+) (vraR) [Streptomyces sp. NBC_00191]
MVRTALRVILDAEPDLEVIGEASTGAEAVPVVRELRPDVVLMDVRMPEIDGIRATEQILATLDEPPRILVVTTFENDSYV
YDALRAGAAGFLLKRAAAEELVQAVRLVARSDSLLFPAAVRSLAAEYGRRSTPAPPPWAARLTEREAEVLRLMATGLTNA
EIAGRMGVGPATAKTHVASVLAKTGARDRTQAVIAAYESGFISPG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=654559 OHT93_RS08560 WP_406279292.1 1859136..1859753(+) (vraR) [Streptomyces sp. NBC_00191]
ATGGTCCGTACGGCGCTGCGCGTCATCCTGGACGCCGAGCCCGACCTGGAGGTGATCGGCGAGGCGTCGACCGGCGCGGA
GGCCGTCCCGGTGGTGCGTGAGCTGCGACCCGACGTGGTCCTGATGGATGTACGGATGCCGGAGATCGACGGCATCCGCG
CCACCGAGCAGATCCTGGCCACGCTCGACGAACCGCCGCGGATCCTTGTGGTGACGACCTTCGAGAACGACTCCTATGTG
TACGACGCGCTGCGCGCCGGGGCCGCGGGCTTTCTGCTCAAGCGGGCGGCGGCCGAGGAGCTCGTCCAGGCGGTCCGTCT
GGTGGCACGCAGTGACTCGCTGCTCTTCCCCGCGGCCGTGCGCTCGCTGGCAGCCGAGTACGGCCGCCGCAGCACCCCCG
CACCCCCGCCGTGGGCGGCGCGGCTGACCGAGCGCGAGGCAGAGGTGCTGCGGCTGATGGCGACGGGGCTGACGAACGCG
GAGATCGCCGGGCGGATGGGCGTGGGTCCCGCGACGGCCAAGACGCATGTGGCCTCGGTCCTGGCGAAGACCGGCGCCAG
GGACCGTACCCAGGCGGTGATCGCGGCGTACGAGTCGGGGTTCATCTCACCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(142-195)

Response regulator receiver domain (Response_reg)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.931

99.024

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

35.514

100

0.371