Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT93_RS08150 Genome accession   NZ_CP108130
Coordinates   1774225..1774869 (-) Length   214 a.a.
NCBI ID   WP_266477903.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769225..1779869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS08120 (OHT93_08085) - 1769539..1770306 (-) 768 WP_406265731.1 sulfite exporter TauE/SafE family protein -
  OHT93_RS08125 (OHT93_08090) - 1770365..1771330 (-) 966 WP_266477907.1 SPFH domain-containing protein -
  OHT93_RS08130 (OHT93_08095) - 1771422..1771850 (-) 429 WP_324971985.1 NfeD family protein -
  OHT93_RS08135 (OHT93_08100) - 1771939..1772730 (-) 792 WP_266477905.1 ABC transporter ATP-binding protein -
  OHT93_RS08140 (OHT93_08105) - 1772866..1773648 (+) 783 WP_406265735.1 hypothetical protein -
  OHT93_RS08145 (OHT93_08110) - 1773841..1774086 (-) 246 WP_406265738.1 chaplin family protein -
  OHT93_RS08150 (OHT93_08115) vraR 1774225..1774869 (-) 645 WP_266477903.1 response regulator transcription factor Regulator
  OHT93_RS08155 (OHT93_08120) - 1774862..1776007 (-) 1146 WP_406265741.1 GAF domain-containing sensor histidine kinase -
  OHT93_RS08160 (OHT93_08125) - 1776197..1776898 (+) 702 WP_406265744.1 SDR family NAD(P)-dependent oxidoreductase -
  OHT93_RS08165 (OHT93_08130) - 1776895..1777989 (+) 1095 WP_406265747.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHT93_RS08170 (OHT93_08135) - 1778268..1778999 (+) 732 WP_406265750.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23113.43 Da        Isoelectric Point: 5.3572

>NTDB_id=654558 OHT93_RS08150 WP_266477903.1 1774225..1774869(-) (vraR) [Streptomyces sp. NBC_00191]
MADKTIHVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELKPDVVLMDVKMPGMDGIDALRKMRELANPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPEALAGAIRSVHAGHVLLQPEVAGALLSPDDQSSGTGRGTNLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTD

Nucleotide


Download         Length: 645 bp        

>NTDB_id=654558 OHT93_RS08150 WP_266477903.1 1774225..1774869(-) (vraR) [Streptomyces sp. NBC_00191]
GTGGCTGACAAGACGATTCACGTCCTCCTGGTCGACGACCACCAGGTGGTCCGCCGCGGCCTGCGTACCTTCCTCGAGGT
CCAGGACGACATCGAGGTCGTCGGCGAAGCGGCGGACGGGGCTGAAGGCGTCGCCCGCGCCGAGGAGTTGAAGCCGGATG
TCGTCCTGATGGACGTCAAGATGCCCGGCATGGACGGCATCGACGCGCTCCGTAAGATGCGCGAACTGGCCAACCCCGCC
AAGGTGTTGATTGTCACGAGCTTCACCGAACAGCGCACGGTCGTCCCCGCGCTGCGCGCGGGCGCTTCGGGCTACGTGTA
CAAGGACGTCGACCCCGAGGCGCTGGCCGGCGCCATCCGCTCGGTCCACGCGGGCCATGTGCTGCTCCAGCCGGAGGTCG
CGGGCGCTCTTCTCTCCCCGGACGACCAGAGCAGCGGGACGGGCCGCGGCACCAACCTCACCGAACGCGAGCGCGAGGTC
CTGGGCCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGGGCGCTCGTCCTGTCGGAGAAGACTGTCAAGACGCA
CGTCTCGAACATCCTGATGAAGCTGGACCTGGCAGATCGCACGCAGGCGGCGTTGTGGGCGGTCAGACATGGCCTGACGG
ACTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.635

97.196

0.453
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.388