Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | L5I17_RS04310 | Genome accession | NZ_CP091901 |
| Coordinates | 870629..871156 (+) | Length | 175 a.a. |
| NCBI ID | WP_063855925.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain 59 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 862734..900184 | 870629..871156 | within | 0 |
Gene organization within MGE regions
Location: 862734..900184
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5I17_RS04240 (L5I17_04240) | - | 862734..863897 (-) | 1164 | WP_010815116.1 | site-specific integrase | - |
| L5I17_RS04245 (L5I17_04245) | - | 863900..864139 (-) | 240 | WP_010815117.1 | hypothetical protein | - |
| L5I17_RS04250 (L5I17_04250) | - | 864141..864380 (-) | 240 | WP_002395685.1 | hypothetical protein | - |
| L5I17_RS04255 (L5I17_04255) | - | 864444..864872 (-) | 429 | WP_010815118.1 | ImmA/IrrE family metallo-endopeptidase | - |
| L5I17_RS04260 (L5I17_04260) | - | 864887..865300 (-) | 414 | WP_010815119.1 | helix-turn-helix transcriptional regulator | - |
| L5I17_RS04265 (L5I17_04265) | - | 865532..865741 (+) | 210 | WP_010815120.1 | helix-turn-helix transcriptional regulator | - |
| L5I17_RS04270 (L5I17_04270) | - | 865745..866029 (+) | 285 | WP_010815121.1 | hypothetical protein | - |
| L5I17_RS04275 (L5I17_04275) | - | 866045..866743 (+) | 699 | WP_238468174.1 | Rha family transcriptional regulator | - |
| L5I17_RS04280 (L5I17_04280) | - | 866835..867008 (+) | 174 | WP_238468176.1 | hypothetical protein | - |
| L5I17_RS15775 | - | 867208..867330 (+) | 123 | WP_002399179.1 | hypothetical protein | - |
| L5I17_RS04285 (L5I17_04285) | - | 867314..867793 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| L5I17_RS04290 (L5I17_04290) | - | 867805..868821 (+) | 1017 | WP_002365157.1 | AAA family ATPase | - |
| L5I17_RS04295 (L5I17_04295) | - | 868826..869467 (+) | 642 | WP_002365158.1 | putative HNHc nuclease | - |
| L5I17_RS04300 (L5I17_04300) | - | 869471..870331 (+) | 861 | WP_238468178.1 | helix-turn-helix domain-containing protein | - |
| L5I17_RS04305 (L5I17_04305) | - | 870331..870639 (+) | 309 | WP_002381633.1 | MazG-like family protein | - |
| L5I17_RS04310 (L5I17_04310) | ssb | 870629..871156 (+) | 528 | WP_063855925.1 | single-stranded DNA-binding protein | Machinery gene |
| L5I17_RS04315 (L5I17_04315) | - | 871169..871498 (+) | 330 | WP_010821535.1 | hypothetical protein | - |
| L5I17_RS04320 (L5I17_04320) | - | 871518..871724 (+) | 207 | WP_002385650.1 | hypothetical protein | - |
| L5I17_RS04325 (L5I17_04325) | - | 871778..872496 (+) | 719 | Protein_837 | DNA methyltransferase | - |
| L5I17_RS04330 (L5I17_04330) | - | 872514..873206 (+) | 693 | WP_010818750.1 | N-6 DNA methylase | - |
| L5I17_RS04335 (L5I17_04335) | - | 873203..874147 (+) | 945 | WP_015212252.1 | site-specific integrase | - |
| L5I17_RS04340 (L5I17_04340) | - | 874160..874732 (+) | 573 | WP_238464094.1 | hypothetical protein | - |
| L5I17_RS04345 (L5I17_04345) | - | 874716..875117 (+) | 402 | WP_238468223.1 | YopX family protein | - |
| L5I17_RS04350 (L5I17_04350) | - | 875114..875263 (+) | 150 | WP_238468229.1 | hypothetical protein | - |
| L5I17_RS04355 (L5I17_04355) | - | 875653..876069 (+) | 417 | WP_002357362.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| L5I17_RS04365 (L5I17_04365) | - | 876532..876981 (+) | 450 | WP_048948707.1 | hypothetical protein | - |
| L5I17_RS04370 (L5I17_04370) | - | 877169..877537 (+) | 369 | WP_053086780.1 | hypothetical protein | - |
| L5I17_RS04375 (L5I17_04375) | terS | 877584..878387 (+) | 804 | WP_172500161.1 | phage terminase small subunit | - |
| L5I17_RS04380 (L5I17_04380) | - | 878359..879663 (+) | 1305 | WP_048948767.1 | PBSX family phage terminase large subunit | - |
| L5I17_RS04385 (L5I17_04385) | - | 879677..881104 (+) | 1428 | WP_238468180.1 | phage portal protein | - |
| L5I17_RS04390 (L5I17_04390) | - | 881085..881396 (+) | 312 | WP_002406137.1 | ribosomal-processing cysteine protease Prp | - |
| L5I17_RS04395 (L5I17_04395) | - | 881397..882545 (+) | 1149 | WP_010815134.1 | minor capsid protein | - |
| L5I17_RS04400 (L5I17_04400) | - | 882706..883356 (+) | 651 | WP_010815135.1 | DUF4355 domain-containing protein | - |
| L5I17_RS04405 (L5I17_04405) | - | 883372..884409 (+) | 1038 | WP_002406133.1 | major capsid protein | - |
| L5I17_RS04410 (L5I17_04410) | - | 884423..884761 (+) | 339 | WP_002415688.1 | phage head-tail connector protein | - |
| L5I17_RS04415 (L5I17_04415) | - | 884742..885083 (+) | 342 | WP_002406131.1 | hypothetical protein | - |
| L5I17_RS04420 (L5I17_04420) | - | 885083..885622 (+) | 540 | WP_010815136.1 | hypothetical protein | - |
| L5I17_RS04425 (L5I17_04425) | - | 885619..885981 (+) | 363 | WP_002415689.1 | hypothetical protein | - |
| L5I17_RS04430 (L5I17_04430) | - | 886001..886459 (+) | 459 | WP_010815137.1 | hypothetical protein | - |
| L5I17_RS04435 (L5I17_04435) | - | 886516..886926 (+) | 411 | WP_002406126.1 | DUF6096 family protein | - |
| L5I17_RS04440 (L5I17_04440) | - | 886959..887318 (+) | 360 | WP_002406125.1 | hypothetical protein | - |
| L5I17_RS04445 (L5I17_04445) | - | 887328..891863 (+) | 4536 | WP_238468225.1 | transglycosylase SLT domain-containing protein | - |
| L5I17_RS04450 (L5I17_04450) | - | 891874..892239 (+) | 366 | WP_010815139.1 | DUF6711 family protein | - |
| L5I17_RS04455 (L5I17_04455) | - | 892256..894673 (+) | 2418 | WP_002406121.1 | gp58-like family protein | - |
| L5I17_RS15780 | - | 894693..894821 (+) | 129 | WP_016024399.1 | hypothetical protein | - |
| L5I17_RS04460 (L5I17_04460) | - | 894833..895855 (+) | 1023 | WP_002406119.1 | pyocin knob domain-containing protein | - |
| L5I17_RS04465 (L5I17_04465) | - | 895935..896156 (+) | 222 | WP_002406118.1 | hypothetical protein | - |
| L5I17_RS04470 (L5I17_04470) | - | 896149..896385 (+) | 237 | WP_010815140.1 | phage holin | - |
| L5I17_RS04475 (L5I17_04475) | - | 896382..897683 (+) | 1302 | WP_010815141.1 | LysM peptidoglycan-binding domain-containing protein | - |
| L5I17_RS04480 (L5I17_04480) | - | 898107..898640 (+) | 534 | WP_002403782.1 | PBECR4 domain-containing protein | - |
| L5I17_RS04490 (L5I17_04490) | - | 898859..899344 (+) | 486 | WP_010815142.1 | hypothetical protein | - |
| L5I17_RS04495 (L5I17_04495) | - | 899609..900184 (-) | 576 | WP_010815143.1 | SHOCT domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19325.21 Da Isoelectric Point: 4.6968
>NTDB_id=654538 L5I17_RS04310 WP_063855925.1 870629..871156(+) (ssb) [Enterococcus faecalis strain 59]
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=654538 L5I17_RS04310 WP_063855925.1 870629..871156(+) (ssb) [Enterococcus faecalis strain 59]
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.989 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.865 |
100 |
0.589 |