Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU08_RS20540 Genome accession   NZ_CP108128
Coordinates   4706359..4706958 (+) Length   199 a.a.
NCBI ID   WP_081218503.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4701359..4711958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS20525 (OHU08_20515) - 4703254..4704786 (+) 1533 WP_365559978.1 substrate-binding domain-containing protein -
  OHU08_RS20530 (OHU08_20520) - 4704827..4705567 (-) 741 WP_164372848.1 SLATT domain-containing protein -
  OHU08_RS20535 (OHU08_20525) - 4705928..4706272 (+) 345 WP_081218502.1 YbaB/EbfC family nucleoid-associated protein -
  OHU08_RS20540 (OHU08_20530) recR 4706359..4706958 (+) 600 WP_081218503.1 recombination mediator RecR Machinery gene
  OHU08_RS20545 (OHU08_20535) - 4706951..4707610 (+) 660 WP_164372849.1 DUF5063 domain-containing protein -
  OHU08_RS20550 (OHU08_20540) - 4707859..4709136 (+) 1278 WP_081218505.1 aspartate kinase -
  OHU08_RS20555 (OHU08_20545) - 4709133..4710191 (+) 1059 WP_164372850.1 aspartate-semialdehyde dehydrogenase -
  OHU08_RS20560 (OHU08_20550) - 4710719..4711291 (+) 573 WP_406380566.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21870.32 Da        Isoelectric Point: 4.9908

>NTDB_id=654505 OHU08_RS20540 WP_081218503.1 4706359..4706958(+) (recR) [Streptomyces sp. NBC_00197]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654505 OHU08_RS20540 WP_081218503.1 4706359..4706958(+) (recR) [Streptomyces sp. NBC_00197]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGATCCGCGCCGCGACCTCACGGTG
ATCTGTGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGACCTGCGGATAAGGGAACTCCTGACCCGTCTCGCCGACGGCA
CGGTCACGGAGCTGATCCTGGCGACGGACCCGAACCTGGAGGGCGAGGCCACCGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGTGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467