Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG975_RS25570 Genome accession   NZ_CP108126
Coordinates   5693928..5694527 (+) Length   199 a.a.
NCBI ID   WP_107018120.1    Uniprot ID   A0A2P8Q5R9
Organism   Streptomyces sp. NBC_00203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5688928..5699527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS25555 (OG975_25465) - 5689416..5692091 (-) 2676 WP_406331695.1 ABC transporter substrate-binding protein -
  OG975_RS25560 (OG975_25470) - 5692438..5693178 (-) 741 WP_406331696.1 SLATT domain-containing protein -
  OG975_RS25565 (OG975_25475) - 5693483..5693827 (+) 345 WP_330306112.1 YbaB/EbfC family nucleoid-associated protein -
  OG975_RS25570 (OG975_25480) recR 5693928..5694527 (+) 600 WP_107018120.1 recombination mediator RecR Machinery gene
  OG975_RS25575 (OG975_25485) - 5694520..5695179 (+) 660 WP_406331697.1 DUF5063 domain-containing protein -
  OG975_RS25580 (OG975_25490) - 5695314..5695625 (+) 312 WP_406331699.1 trypco2 family protein -
  OG975_RS25585 (OG975_25495) - 5695668..5698409 (+) 2742 WP_406336455.1 tetratricopeptide repeat protein -
  OG975_RS25590 (OG975_25500) - 5698348..5698761 (-) 414 WP_406331700.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21782.22 Da        Isoelectric Point: 4.9908

>NTDB_id=654426 OG975_RS25570 WP_107018120.1 5693928..5694527(+) (recR) [Streptomyces sp. NBC_00203]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654426 OG975_RS25570 WP_107018120.1 5693928..5694527(+) (recR) [Streptomyces sp. NBC_00203]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACGGACGTCCGCCGTCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTTC
GCTTCTGCGCGACCTGCGGCAATGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGTCGGTC
ATCTGCGTGGTCGAGGAACCGAAGGACGTCGTCGCGGTCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGCCCCGACGACCTGCGGATAAGGGAACTCCTCGCCCGCCTCGCCGACGGCG
CGGTCACCGAGCTGATCCTCGCCACGGACCCGAACCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCTGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8Q5R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457