Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG911_RS37395 Genome accession   NZ_CP108123
Coordinates   8156349..8156999 (-) Length   216 a.a.
NCBI ID   WP_326632078.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00208     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8151349..8161999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG911_RS37375 (OG911_37435) - 8152101..8152931 (-) 831 WP_326632074.1 alpha/beta fold hydrolase -
  OG911_RS37380 (OG911_37440) - 8153123..8154007 (+) 885 WP_326632076.1 RNA polymerase sigma-70 factor -
  OG911_RS37385 (OG911_37445) - 8154273..8155040 (+) 768 WP_326632077.1 GntR family transcriptional regulator -
  OG911_RS37390 (OG911_37450) - 8155091..8156248 (-) 1158 WP_326602346.1 ROK family transcriptional regulator -
  OG911_RS37395 (OG911_37455) vraR 8156349..8156999 (-) 651 WP_326632078.1 response regulator transcription factor Regulator
  OG911_RS37400 (OG911_37460) - 8157004..8158176 (-) 1173 WP_326632080.1 histidine kinase -
  OG911_RS37405 (OG911_37465) - 8158285..8159223 (+) 939 WP_328920984.1 ATP-binding cassette domain-containing protein -
  OG911_RS37410 (OG911_37470) - 8159220..8159963 (+) 744 WP_326634398.1 ABC transporter permease -
  OG911_RS37415 (OG911_37475) - 8160088..8160525 (+) 438 WP_326632083.1 hypothetical protein -
  OG911_RS37420 (OG911_37480) mug 8160600..8161157 (-) 558 WP_326632084.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23109.99 Da        Isoelectric Point: 6.2675

>NTDB_id=654368 OG911_RS37395 WP_326632078.1 8156349..8156999(-) (vraR) [Streptomyces sp. NBC_00208]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVHKLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTSKAKAVMKRASLTEREATV
LRLMARGLSNAEIATKLVVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=654368 OG911_RS37395 WP_326632078.1 8156349..8156999(-) (vraR) [Streptomyces sp. NBC_00208]
ATGCCGGTTACCGTTCTTCTGGTCGACGACGAACCTCTCGTACGCGCGGGGCTGCGCGCGGTCCTTGAGGCTCAGCCCGA
TATCGAGGTGGTGGGCGAGGCGGCGGACGGCGCAGCAGTGATCCCGCTGGTGCACAAGTTGCGCCCCGATGTGGTGGCGA
TGGATGTGCGGATGCCCTTGATGGACGGCATCGAGGCGACCCGGGTGGTGCTGCGCACGGTGCCTGATCCGCCGAAGATC
CTGGTGGTGACGACATTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCGGACGGCTTTCTGCTCAAGCG
TGCCCGGCCCGCGGAGATCGTGCATGCGGTGCGCCTGGTCGCCGAGGGTGAGTCTCTGCTGTTCCCGGCCGCGGTCCGGC
AGCTCGCCGCCGAGTACGGGACGAGCAAGGCGAAGGCGGTCATGAAGCGGGCCTCGCTCACCGAGCGCGAGGCCACGGTG
CTCCGGTTGATGGCCCGGGGACTCTCGAATGCGGAGATCGCCACCAAGCTCGTGGTCGGCGTCGAGACGGTGAAGACCCA
TGTCAGCGCGGTGCTGGCAAAGTTGGGGGCCAGGGATCGGACCCAGGCGGTGATCGCCGCGTACGAGTCCGGCTTCGTGG
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.396

100

0.426
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.38