Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG911_RS25700 Genome accession   NZ_CP108123
Coordinates   5561471..5562148 (+) Length   225 a.a.
NCBI ID   WP_326604460.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00208     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5556471..5567148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG911_RS25680 (OG911_25730) - 5556765..5557778 (+) 1014 WP_328920580.1 hypothetical protein -
  OG911_RS25685 (OG911_25735) - 5557833..5558975 (-) 1143 WP_326629327.1 NADH-quinone oxidoreductase subunit D -
  OG911_RS25690 (OG911_25740) - 5559101..5560132 (-) 1032 WP_326629328.1 SAM-dependent methyltransferase -
  OG911_RS25695 (OG911_25745) - 5560229..5561428 (+) 1200 WP_326604461.1 sensor histidine kinase -
  OG911_RS25700 (OG911_25750) vraR 5561471..5562148 (+) 678 WP_326604460.1 response regulator transcription factor Regulator
  OG911_RS25705 (OG911_25755) - 5562172..5563284 (-) 1113 WP_326634238.1 DUF5937 family protein -
  OG911_RS25710 (OG911_25760) - 5563389..5563649 (+) 261 WP_326814604.1 hypothetical protein -
  OG911_RS25715 (OG911_25765) - 5563687..5564922 (-) 1236 WP_328920581.1 beta-eliminating lyase-related protein -
  OG911_RS25720 (OG911_25770) - 5565104..5566063 (+) 960 WP_326814602.1 DUF2520 domain-containing protein -
  OG911_RS25725 (OG911_25775) panC 5566060..5567070 (+) 1011 WP_328920582.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24192.09 Da        Isoelectric Point: 6.2654

>NTDB_id=654345 OG911_RS25700 WP_326604460.1 5561471..5562148(+) (vraR) [Streptomyces sp. NBC_00208]
MAIRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIENLRSTAVDVVLMDVRMPRLDGVEATRRICARPDAPKVL
ILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLGAIRSVHSGDAVVAPSTTRRLLDRFSSMLPSSTDEPKHKDIGKLTER
EREVMLLVAQGMSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLVRAGGGGAG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=654345 OG911_RS25700 WP_326604460.1 5561471..5562148(+) (vraR) [Streptomyces sp. NBC_00208]
ATGGCGATCCGCGTGATGCTCGTCGACGACCAGGTGCTGCTGCGCACGGGCTTCCGGATGGTGCTCGCGGCGCAGCCGGA
CATGGAGGTCGTCGCCGAGGCCGGCGACGGCGCGGAGGCGATCGAGAACCTTCGCTCCACCGCCGTCGACGTGGTGCTGA
TGGACGTGCGCATGCCGAGGCTGGACGGTGTCGAGGCGACCCGGCGCATCTGCGCCCGGCCCGATGCGCCCAAGGTGCTC
ATCCTGACCACGTTCGACCTGGACGAATACGCCTTCTCCGGTCTGAAGGCCGGGGCCAGCGGTTTCATGCTCAAGGACGT
GCCGCCGGCCGAACTGCTCGGCGCGATCCGTTCGGTGCACAGCGGCGACGCGGTCGTCGCCCCGTCCACCACCCGGCGGC
TGCTCGACCGCTTCTCGTCCATGCTGCCGAGCAGCACCGACGAACCCAAGCACAAGGACATCGGCAAGCTCACCGAACGC
GAACGCGAAGTGATGCTGCTGGTCGCGCAGGGCATGTCGAACGGCGAGATCGCGGCGCGGCTGGTGCTCTCCGAGGCGAC
GGTCAAGACGCACGTCGGCCGCATCCTCACCAAGCTGAACCTGCGCGACCGGGTGCAGGTCGTCGTGCTCGCGTACGAGA
CGGGGCTGGTGCGGGCCGGCGGAGGCGGGGCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.557

98.222

0.369
  degU Bacillus subtilis subsp. subtilis str. 168

37.22

99.111

0.369