Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG911_RS22250 Genome accession   NZ_CP108123
Coordinates   4820443..4821042 (-) Length   199 a.a.
NCBI ID   WP_267003617.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4815443..4826042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG911_RS22230 (OG911_22270) - 4816173..4816748 (-) 576 WP_267008025.1 SigE family RNA polymerase sigma factor -
  OG911_RS22235 (OG911_22275) - 4817128..4818192 (-) 1065 WP_326628521.1 aspartate-semialdehyde dehydrogenase -
  OG911_RS22240 (OG911_22280) - 4818189..4819460 (-) 1272 WP_267003613.1 aspartate kinase -
  OG911_RS22245 (OG911_22285) - 4819691..4820350 (-) 660 WP_326604982.1 DUF5063 domain-containing protein -
  OG911_RS22250 (OG911_22290) recR 4820443..4821042 (-) 600 WP_267003617.1 recombination mediator RecR Machinery gene
  OG911_RS22255 (OG911_22295) - 4821116..4821451 (-) 336 WP_267008026.1 YbaB/EbfC family nucleoid-associated protein -
  OG911_RS22260 (OG911_22300) - 4821808..4822635 (+) 828 WP_326814769.1 SLATT domain-containing protein -
  OG911_RS22265 (OG911_22305) - 4822685..4823335 (-) 651 WP_326628524.1 hypothetical protein -
  OG911_RS22270 (OG911_22310) - 4823469..4824200 (-) 732 WP_326628526.1 GntR family transcriptional regulator -
  OG911_RS22275 (OG911_22315) - 4824314..4825696 (-) 1383 WP_030977753.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21904.19 Da        Isoelectric Point: 5.1721

>NTDB_id=654339 OG911_RS22250 WP_267003617.1 4820443..4821042(-) (recR) [Streptomyces sp. NBC_00208]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQEEQCGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLSDGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654339 OG911_RS22250 WP_267003617.1 4820443..4821042(-) (recR) [Streptomyces sp. NBC_00208]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCTCGGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCGGGATCTGCCGCGACGCGCGTCGCGACCGGACGGTG
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGTTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGATCTGCGCATCCGTGAGCTGCTGGCGAGGCTCTCCGACGGGT
CCATCACGGAACTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCCATGGGCCTGCGGGTGACCCGGCTGGCCAGCGGGCTGCCGGTGGGCGGCGACCTCGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCGTTCGAGGGGAGGCGGCTGCTCGATGTGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457