Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG911_RS21825 Genome accession   NZ_CP108123
Coordinates   4732628..4733254 (+) Length   208 a.a.
NCBI ID   WP_326628428.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00208     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4727628..4738254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG911_RS21805 (OG911_21845) - 4728422..4729822 (-) 1401 WP_328920454.1 M1 family metallopeptidase -
  OG911_RS21810 (OG911_21850) - 4729870..4730472 (-) 603 WP_328920455.1 ankyrin repeat domain-containing protein -
  OG911_RS21815 (OG911_21855) - 4730505..4731062 (-) 558 WP_326628424.1 heme-binding protein -
  OG911_RS21820 (OG911_21860) - 4731315..4732631 (+) 1317 WP_328920456.1 sensor histidine kinase -
  OG911_RS21825 (OG911_21865) vraR 4732628..4733254 (+) 627 WP_326628428.1 response regulator transcription factor Regulator
  OG911_RS21830 (OG911_21870) - 4733372..4733869 (+) 498 WP_267003488.1 hypothetical protein -
  OG911_RS21835 (OG911_21875) - 4733897..4734598 (-) 702 WP_326814795.1 pentapeptide repeat-containing protein -
  OG911_RS21840 (OG911_21880) - 4734698..4735897 (+) 1200 WP_326814794.1 NAD(P)-binding protein -
  OG911_RS21845 (OG911_21885) - 4735944..4736945 (+) 1002 WP_326814793.1 zinc-binding dehydrogenase -
  OG911_RS21850 (OG911_21890) - 4736963..4737436 (-) 474 WP_267003496.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22082.40 Da        Isoelectric Point: 5.1096

>NTDB_id=654337 OG911_RS21825 WP_326628428.1 4732628..4733254(+) (vraR) [Streptomyces sp. NBC_00208]
MTPPAVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALAARLTPDVVLMDLQLGEGIDGVEATRRIAVTGVH
VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRSPLPTLTDRERDILGQLSQ
GLGNREIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 627 bp        

>NTDB_id=654337 OG911_RS21825 WP_326628428.1 4732628..4733254(+) (vraR) [Streptomyces sp. NBC_00208]
ATGACCCCGCCCGCCGTACGGATCCTGCTCTGCGACGACCACGCCGTCGTACGCGCCGGACTGCTCGCCCTCCTGGGCAG
CGAACCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCCGTCGCCCTGGCCGCCCGGCTGACCCCGGACG
TCGTCCTGATGGACCTCCAACTGGGCGAAGGAATCGACGGCGTCGAAGCCACCCGCCGCATCGCGGTCACCGGCGTCCAT
GTCCTCGTCCTCACGACGTACGACACGGACGCCGACATCACCCGCGCCATCGAAGCGGGCGCCACCGGCTACCTGCTGAA
GGCGGAACGCCCGGAGGAACTGTTCGCCGCGATCCGCTCGGCGGCCCAGGGCCGCACCACGCTCTCCCCACCGGTTGCCA
GCCGTGTCATGGCCCGCATGCGCAGCCCCCTGCCGACGCTCACGGACCGCGAACGCGACATCCTGGGCCAGCTGTCCCAG
GGCCTGGGCAACCGGGAGATCGCCCGGGCCCTGTTCATCAGCGAGGCCACGGTCAAGACGCATCTGGGCCGCATCTACGA
CAAACTCGGCGTCGACACCCGCGCGGGCGCCGTGTCCGTGGCGAAGGAGCAGCGGCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(146-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.097

99.519

0.399
  degU Bacillus subtilis subsp. subtilis str. 168

35.78

100

0.375