Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG911_RS16770 Genome accession   NZ_CP108123
Coordinates   3625466..3626116 (+) Length   216 a.a.
NCBI ID   WP_326627221.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00208     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620466..3631116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG911_RS16745 (OG911_16780) - 3621258..3621581 (-) 324 WP_030916001.1 STAS domain-containing protein -
  OG911_RS16750 (OG911_16785) - 3621808..3622656 (-) 849 WP_328920284.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG911_RS16755 (OG911_16790) - 3622958..3623530 (+) 573 WP_326605800.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG911_RS16760 (OG911_16795) - 3623561..3624121 (-) 561 WP_326817769.1 hypothetical protein -
  OG911_RS16765 (OG911_16800) - 3624273..3625469 (+) 1197 WP_328920285.1 histidine kinase -
  OG911_RS16770 (OG911_16805) vraR 3625466..3626116 (+) 651 WP_326627221.1 response regulator transcription factor Regulator
  OG911_RS16775 (OG911_16810) - 3626285..3628156 (+) 1872 WP_328920286.1 glycoside hydrolase family 18 chitinase -
  OG911_RS16780 (OG911_16815) - 3628338..3628784 (-) 447 WP_326605795.1 DUF2550 domain-containing protein -
  OG911_RS16785 (OG911_16820) - 3628922..3629296 (-) 375 WP_030915989.1 F0F1 ATP synthase subunit epsilon -
  OG911_RS16790 (OG911_16825) atpD 3629407..3630849 (-) 1443 WP_326627225.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22872.51 Da        Isoelectric Point: 4.8291

>NTDB_id=654326 OG911_RS16770 WP_326627221.1 3625466..3626116(+) (vraR) [Streptomyces sp. NBC_00208]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEAAVRLARELRPDLVLMDVQMPRLDGVSATRQVVAEQLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTEAHELLEAVRTVARGEGLIAPAVTRRLIAEFAGTTPARPANAPDPAVLDALTRR
EREVLGCLGVGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=654326 OG911_RS16770 WP_326627221.1 3625466..3626116(+) (vraR) [Streptomyces sp. NBC_00208]
ATGACGATCCGGGTACTGGTCGCGGAGGACCAGTCGGCCGTGCGCGCGGGGCTGGTGCTCATTCTGGGCAGCGCGCCCGA
TATCGAGGTCGTCGGCGAGGCGGCGGACGGCGAGGCGGCGGTGCGTCTCGCCCGTGAACTGCGTCCGGATCTGGTGCTGA
TGGATGTCCAGATGCCCCGGCTGGACGGAGTGTCGGCGACGAGGCAGGTGGTGGCCGAGCAGTTGGCCGATGTGCTCGTG
CTGACGACGTTCGATCTGGACGAGTACGTCTTCGGGGCGCTGCGGGCGGGCGCGGCGGGCTTTCTGCTGAAGAACACCGA
GGCGCACGAACTGTTGGAAGCGGTACGGACGGTGGCGCGCGGCGAGGGCCTGATCGCCCCTGCCGTGACCCGCCGTCTGA
TCGCCGAGTTCGCCGGAACGACGCCGGCGCGGCCTGCGAACGCACCCGATCCGGCGGTTCTCGATGCCCTGACGCGGCGC
GAGCGCGAGGTACTCGGGTGTCTGGGCGTTGGGCTGTCGAACGCCGAGATCGCGGTGCGTCTTTCGATGGCGGAGGCGAC
GGTGAAGACGCACGTCAGCAGGTTGCTGGGGAAGCTGGAGCTGCGCAGCAGGGTCCAGGCAGCCGTACTGGCACAGGAGT
TGGGGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.315

98.611

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.403