Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG911_RS12705 Genome accession   NZ_CP108123
Coordinates   2653816..2654487 (-) Length   223 a.a.
NCBI ID   WP_326626170.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00208     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2648816..2659487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG911_RS12690 (OG911_12715) - 2650010..2650849 (+) 840 WP_326626168.1 TIM barrel protein -
  OG911_RS12695 (OG911_12720) - 2650897..2651796 (+) 900 WP_267000385.1 2-hydroxy-3-oxopropionate reductase -
  OG911_RS12700 (OG911_12725) - 2651993..2653450 (+) 1458 WP_326626169.1 catalase -
  OG911_RS12705 (OG911_12730) vraR 2653816..2654487 (-) 672 WP_326626170.1 response regulator transcription factor Regulator
  OG911_RS12710 (OG911_12735) - 2654484..2655791 (-) 1308 WP_326626171.1 sensor histidine kinase -
  OG911_RS12715 (OG911_12740) - 2655817..2656980 (-) 1164 WP_326626173.1 acyltransferase -
  OG911_RS12720 (OG911_12745) - 2656973..2657962 (-) 990 WP_328920167.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24016.80 Da        Isoelectric Point: 4.8204

>NTDB_id=654312 OG911_RS12705 WP_326626170.1 2653816..2654487(-) (vraR) [Streptomyces sp. NBC_00208]
MTTIRVLIADDQVMVRQGFTVLLDAEPGIEVVGQAVDGLDAVSKVAELAPDVVLMDVRMPVLGGIEATRRITSPHDAQVK
VLILTTFDLDEYVYEALRAGASGFLLKDASVEELVHAVRVVAAGDALLAPNITKRLIAEFSRMTAAPRAPLMDRVGDLTE
RETEVLSLIAQGLSNAEIATRLVVAEQTAKTHVSRILAKLGLRDRTQAAVFAYETGLVRPTGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=654312 OG911_RS12705 WP_326626170.1 2653816..2654487(-) (vraR) [Streptomyces sp. NBC_00208]
GTGACGACCATCCGTGTACTGATCGCCGACGACCAGGTGATGGTCCGCCAGGGATTTACGGTGTTGCTCGACGCAGAACC
CGGCATCGAGGTCGTCGGTCAGGCGGTGGACGGTCTCGACGCCGTCTCCAAAGTCGCCGAACTCGCCCCGGATGTGGTCC
TGATGGATGTCCGGATGCCCGTGCTCGGCGGCATCGAGGCGACCCGCCGCATCACTTCACCGCACGACGCCCAGGTCAAG
GTGCTCATCCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGTGCGTCCGGCTTTCTGCTCAA
GGACGCTTCGGTCGAGGAACTGGTCCATGCGGTACGGGTGGTGGCAGCAGGCGACGCGCTGCTCGCCCCGAACATCACCA
AGCGGCTGATCGCCGAGTTCTCCCGGATGACAGCGGCGCCCCGGGCCCCGCTCATGGACCGGGTCGGTGATCTGACGGAG
CGTGAGACCGAGGTGCTTTCCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCACGCGCCTGGTGGTGGCGGAGCA
GACGGCGAAGACCCATGTGAGCCGGATCCTGGCCAAGCTGGGGCTGCGCGACCGGACCCAGGCGGCGGTCTTCGCGTACG
AGACGGGCCTGGTACGCCCGACCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-119)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.857

97.309

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

40.529

100

0.413