Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG867_RS25890 Genome accession   NZ_CP108121
Coordinates   5695786..5696430 (+) Length   214 a.a.
NCBI ID   WP_328899534.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5690786..5701430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS25875 (OG867_25885) - 5690786..5693362 (+) 2577 WP_328899537.1 FHA domain-containing protein -
  OG867_RS25880 (OG867_25890) - 5693448..5694206 (-) 759 WP_328899536.1 transglycosylase SLT domain-containing protein -
  OG867_RS25885 (OG867_25895) - 5694648..5695793 (+) 1146 WP_406288895.1 GAF domain-containing sensor histidine kinase -
  OG867_RS25890 (OG867_25900) vraR 5695786..5696430 (+) 645 WP_328899534.1 response regulator transcription factor Regulator
  OG867_RS25895 (OG867_25905) - 5696490..5697269 (-) 780 WP_406288897.1 hypothetical protein -
  OG867_RS25900 (OG867_25910) - 5697424..5698221 (+) 798 WP_406288899.1 ABC transporter ATP-binding protein -
  OG867_RS25905 (OG867_25915) - 5698255..5699100 (+) 846 WP_406288901.1 hypothetical protein -
  OG867_RS25910 (OG867_25920) - 5699160..5699591 (+) 432 WP_328899531.1 NfeD family protein -
  OG867_RS25915 (OG867_25925) - 5699666..5700595 (+) 930 WP_328899530.1 SPFH domain-containing protein -
  OG867_RS25920 (OG867_25930) - 5700659..5701426 (+) 768 WP_406288905.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23137.42 Da        Isoelectric Point: 5.3843

>NTDB_id=654285 OG867_RS25890 WP_328899534.1 5695786..5696430(+) (vraR) [Streptomyces sp. NBC_00209]
MADRIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLSQDEPGTGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=654285 OG867_RS25890 WP_328899534.1 5695786..5696430(+) (vraR) [Streptomyces sp. NBC_00209]
GTGGCTGACAGGATCATCAGGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGCGGCCTGCGCACGTTCCTGGAGAT
CCAGGACGACATCGAGGTCGTCGGCGAGGCGGCCGACGGCGCCGAGGGCGTGGCCAGGACGGAGGAGCTGCGGCCCGATG
TCGTACTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCCGCCTCCGCGAGCTGGAGAACCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTCCCCGCCCTGCGCGCGGGCGCCTCCGGTTACGTATA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCCATCCGCTCCGTGCACGCCGGGCACGTCCTGCTCCAGCCCGAGGTGG
CCGGGGCGCTCCTCTCCCAGGACGAGCCGGGCACGGGCACCGGCCGGGGGAGCACCCTCACCGAACGCGAGCGGGAAGTG
CTCGGCCTGATCGCCGACGGCCGGTCCAACCGCGAGATCGCGCGGGCCCTGGTCCTGTCCGAGAAGACGGTCAAGACCCA
CGTCTCGAACATCCTCATGAAGCTGGACCTGGCCGACCGCACCCAGGCGGCGCTCTGGGCGGTCCGCCACGGAGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407