Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG867_RS18080 Genome accession   NZ_CP108121
Coordinates   3985459..3986871 (-) Length   470 a.a.
NCBI ID   WP_328900823.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3980459..3991871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS18055 (OG867_18055) - 3980610..3981335 (-) 726 WP_406286605.1 hypothetical protein -
  OG867_RS18060 (OG867_18060) - 3981323..3981871 (-) 549 WP_018102282.1 SigE family RNA polymerase sigma factor -
  OG867_RS18065 (OG867_18065) - 3982177..3983079 (-) 903 WP_328900825.1 A/G-specific adenine glycosylase -
  OG867_RS18070 (OG867_18070) - 3983413..3984180 (+) 768 WP_406291021.1 hypothetical protein -
  OG867_RS18075 (OG867_18075) disA 3984209..3985333 (-) 1125 WP_328900824.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG867_RS18080 (OG867_18080) radA/sms 3985459..3986871 (-) 1413 WP_328900823.1 DNA repair protein RadA Machinery gene
  OG867_RS18085 (OG867_18085) - 3987006..3988844 (+) 1839 WP_406286607.1 hypothetical protein -
  OG867_RS18090 (OG867_18090) - 3988858..3989631 (-) 774 WP_406291024.1 hypothetical protein -
  OG867_RS18095 (OG867_18095) - 3989772..3990722 (+) 951 WP_406286609.1 Ppx/GppA family phosphatase -
  OG867_RS18100 (OG867_18100) - 3990844..3991656 (+) 813 WP_328904372.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49548.65 Da        Isoelectric Point: 8.0123

>NTDB_id=654266 OG867_RS18080 WP_328900823.1 3985459..3986871(-) (radA/sms) [Streptomyces sp. NBC_00209]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARPTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDEHRTLYVTGEESASQVRMRADRIHAISDHLYLAAETDLSAV
LAHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRALPRRTRAQAPREDDARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=654266 OG867_RS18080 WP_328900823.1 3985459..3986871(-) (radA/sms) [Streptomyces sp. NBC_00209]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGGACCACGGCCGCGG
GGCGGGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTGGACAGCCGGCAGGCCACCGCCCGGCCGACCGGCGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTGGTGCCCGGGGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCAC
GCTGCTGCTCGACGTCGCGGCGAAGGCGGCGACCGACGAGCACCGCACCCTCTATGTGACGGGCGAGGAGTCCGCGTCCC
AGGTCCGGATGCGGGCCGACCGCATCCATGCGATCAGCGACCACCTGTATCTGGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCCCACCTCGACGCGGTCAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGACGG
CGCGCCGGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGC
TGCTCGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGGCCGCGGCTCCTGGAGCACCTGGTGGACGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGGCTGCGCCTGGTGCGCGGTATCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGATCCGTCCGGCCTGTTCCTCACGCGGCGCGACGAGCCGGTGC
CGGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGACTCGCAG
ATCCCGTCCCCCCGGCGGACCACGTCGGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTGTCCGAGCCGGCCGCCGACC
TGGCGATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTGCAGCGCCGGCTGTCCGAGGCGCACCGGCTGGGGTTCACGCACGCCCT
GGTCCCGACCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTGACGGAAGTCGCCGACATGGGCGACGCGCTCAGGGCGC
TCCCGCGCCGGACCCGCGCACAGGCCCCCCGGGAGGACGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus pneumoniae Rx1

42.198

96.809

0.409
  radA Streptococcus pneumoniae D39

42.198

96.809

0.409
  radA Streptococcus pneumoniae R6

42.198

96.809

0.409
  radA Streptococcus pneumoniae TIGR4

42.198

96.809

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398