Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG867_RS17100 Genome accession   NZ_CP108121
Coordinates   3772399..3772998 (+) Length   199 a.a.
NCBI ID   WP_406286344.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3767399..3777998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS17080 (OG867_17080) - 3769279..3769995 (+) 717 WP_406286341.1 GntR family transcriptional regulator -
  OG867_RS17085 (OG867_17085) - 3770119..3770769 (+) 651 WP_018102114.1 hypothetical protein -
  OG867_RS17090 (OG867_17090) - 3770818..3771597 (-) 780 WP_406291002.1 SLATT domain-containing protein -
  OG867_RS17095 (OG867_17095) - 3771981..3772319 (+) 339 WP_328904383.1 YbaB/EbfC family nucleoid-associated protein -
  OG867_RS17100 (OG867_17100) recR 3772399..3772998 (+) 600 WP_406286344.1 recombination mediator RecR Machinery gene
  OG867_RS17105 (OG867_17105) - 3773091..3773750 (+) 660 WP_328900967.1 DUF5063 domain-containing protein -
  OG867_RS17110 (OG867_17110) - 3773963..3775234 (+) 1272 WP_018102119.1 aspartate kinase -
  OG867_RS17115 (OG867_17115) - 3775231..3776295 (+) 1065 WP_328900966.1 aspartate-semialdehyde dehydrogenase -
  OG867_RS17120 (OG867_17120) - 3776678..3777253 (+) 576 WP_328900965.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21904.14 Da        Isoelectric Point: 5.0142

>NTDB_id=654260 OG867_RS17100 WP_406286344.1 3772399..3772998(+) (recR) [Streptomyces sp. NBC_00209]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEEECGICRDQRRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLSDGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654260 OG867_RS17100 WP_406286344.1 3772399..3772998(+) (recR) [Streptomyces sp. NBC_00209]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGTGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTGCTTCAGGCGGAGCCCACGGATGTGCGGCGCCTGGCCCACGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGTGCGGTCTGCGGCAACGTGGCCCAGGAGGAGGAGTGCGGGATCTGCCGCGACCAGCGGCGCGACCGGTCGGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGGCGCTACCACGTGCTGGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGTGAGCTCCTCGCCCGTCTCTCCGACGGCT
CCATCACCGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGCGTCACCCGGCTCGCCAGTGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACGCT
CGGCCGGGCCTTCGAGGGGAGGCGGCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447