Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OG867_RS12670 Genome accession   NZ_CP108121
Coordinates   2846613..2847218 (+) Length   201 a.a.
NCBI ID   WP_406285103.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841613..2852218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS12640 (OG867_12645) - 2842782..2842964 (-) 183 WP_406285092.1 hypothetical protein -
  OG867_RS12645 (OG867_12650) - 2843013..2843189 (-) 177 WP_406285094.1 hypothetical protein -
  OG867_RS12650 (OG867_12655) - 2843238..2843402 (-) 165 WP_406285096.1 hypothetical protein -
  OG867_RS12655 (OG867_12660) - 2843743..2844696 (+) 954 WP_406290922.1 ABC transporter ATP-binding protein -
  OG867_RS12660 (OG867_12665) - 2844693..2845454 (+) 762 WP_406285098.1 ABC transporter permease -
  OG867_RS12665 (OG867_12670) - 2845451..2846608 (+) 1158 WP_406285100.1 sensor histidine kinase -
  OG867_RS12670 (OG867_12675) letA 2846613..2847218 (+) 606 WP_406285103.1 response regulator Regulator
  OG867_RS12675 (OG867_12680) - 2847256..2848143 (-) 888 WP_406285106.1 ABC transporter permease -
  OG867_RS12680 (OG867_12685) - 2848130..2849110 (-) 981 WP_406285109.1 ATP-binding cassette domain-containing protein -
  OG867_RS12685 (OG867_12690) - 2849185..2850423 (-) 1239 WP_406285111.1 LolA family protein -
  OG867_RS12690 (OG867_12695) - 2850661..2851671 (-) 1011 WP_406285113.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21017.04 Da        Isoelectric Point: 6.4924

>NTDB_id=654252 OG867_RS12670 WP_406285103.1 2846613..2847218(+) (letA) [Streptomyces sp. NBC_00209]
MIRALLADDEHLIRGALAALLSYEQDIDVVAQASHGHEAVAMAIEHRPDVAVIDLLMPGADGISVTESLTAQVPECRCLI
VTSHGLPGHLKRALAVGAAGFSSKTLTASNLAAIIRALHAGSRYIEPALAAAAISVGDSPLSARETDLVNLAADGAPISE
IAERALLTPGTVRNYLSRATTKLGVSNRHEAVREARARGWI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=654252 OG867_RS12670 WP_406285103.1 2846613..2847218(+) (letA) [Streptomyces sp. NBC_00209]
ATGATCCGGGCCCTGCTCGCAGACGACGAACACCTGATCCGCGGGGCACTGGCCGCGCTGCTCTCCTACGAGCAGGACAT
CGACGTCGTCGCCCAGGCATCACATGGCCACGAGGCCGTGGCCATGGCCATCGAACACCGCCCCGACGTCGCGGTCATCG
ACCTGCTGATGCCCGGCGCGGACGGCATCTCCGTCACCGAATCCCTGACCGCACAGGTTCCCGAATGCCGCTGCCTCATC
GTGACCAGCCACGGGCTGCCCGGCCACCTCAAACGTGCGCTCGCCGTTGGCGCCGCAGGGTTCTCCTCCAAAACGCTGAC
CGCCAGCAATCTGGCCGCCATCATCCGCGCCCTGCACGCGGGAAGCCGGTACATCGAGCCCGCGCTCGCCGCCGCCGCCA
TCAGCGTCGGTGACTCCCCGCTCTCCGCACGCGAGACGGACCTGGTGAATCTCGCCGCCGACGGGGCCCCCATCTCCGAG
ATCGCCGAACGCGCGTTGCTCACACCCGGCACCGTCCGCAACTACCTGTCGCGGGCCACCACCAAGCTCGGTGTCAGCAA
CCGGCACGAGGCCGTGCGTGAGGCGCGGGCGCGCGGCTGGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(140-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

36.318

100

0.363
  letA Legionella pneumophila strain ERS1305867

36.318

100

0.363