Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG729_RS30895 Genome accession   NZ_CP108120
Coordinates   6831781..6832413 (+) Length   210 a.a.
NCBI ID   WP_360879642.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6826781..6837413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS30875 (OG729_30840) - 6827573..6828340 (-) 768 WP_360879592.1 transglycosylase SLT domain-containing protein -
  OG729_RS30880 (OG729_30845) - 6828604..6829707 (-) 1104 WP_405809172.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG729_RS30885 (OG729_30850) - 6829749..6830447 (-) 699 WP_405809173.1 SDR family NAD(P)-dependent oxidoreductase -
  OG729_RS30890 (OG729_30855) - 6830619..6831773 (+) 1155 WP_405809175.1 GAF domain-containing sensor histidine kinase -
  OG729_RS30895 (OG729_30860) vraR 6831781..6832413 (+) 633 WP_360879642.1 response regulator transcription factor Regulator
  OG729_RS30900 (OG729_30865) - 6832595..6832843 (+) 249 WP_360879605.1 chaplin -
  OG729_RS30905 (OG729_30870) - 6832968..6833756 (-) 789 WP_360879608.1 hypothetical protein -
  OG729_RS30910 (OG729_30875) - 6833892..6834683 (+) 792 WP_360879611.1 ABC transporter ATP-binding protein -
  OG729_RS30915 (OG729_30880) - 6834774..6835202 (+) 429 WP_360879614.1 NfeD family protein -
  OG729_RS30920 (OG729_30885) - 6835294..6836250 (+) 957 WP_360879617.1 SPFH domain-containing protein -
  OG729_RS30925 (OG729_30890) - 6836309..6837076 (+) 768 WP_360879620.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22641.99 Da        Isoelectric Point: 5.6767

>NTDB_id=654213 OG729_RS30895 WP_360879642.1 6831781..6832413(+) (vraR) [Streptomyces sp. NBC_00210]
MIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGSEGVARAEELKPDVVLMDVKMPGMDGIEALRKLRELANPARVLI
VTSFTEQRTVVPALRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPEVAGALLSQDDLGSGTGRGSTLTEREREVLGLI
ADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTG

Nucleotide


Download         Length: 633 bp        

>NTDB_id=654213 OG729_RS30895 WP_360879642.1 6831781..6832413(+) (vraR) [Streptomyces sp. NBC_00210]
ATGATCCGCGTGCTGCTGGTCGACGACCATCAGGTGGTGCGCCGGGGCCTGCGCACCTTCCTGGAGGTCCAGGACGACAT
CGAGGTCGTCGGCGAGGCGGCGGACGGGTCGGAAGGCGTCGCCCGCGCCGAGGAGCTGAAGCCGGACGTCGTTCTGATGG
ACGTCAAGATGCCCGGCATGGACGGCATCGAGGCGCTCCGCAAGCTCCGCGAACTGGCCAATCCTGCGAGGGTGTTGATC
GTTACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGCGCGGGCGCGGCGGGTTATGTCTACAAGGACGTCGA
CCCCGAGGCGCTGGCCGGCGCGATCCGCTCCGTGCACGCGGGTCATGTGCTGCTCCAGCCGGAGGTCGCGGGCGCGCTGC
TGTCACAGGACGACCTGGGCAGCGGCACGGGCCGCGGCAGCACTCTTACGGAACGCGAGCGGGAGGTGCTCGGGCTGATC
GCCGACGGGCGTTCGAACCGCGAGATCGCCCGGGCGCTCGTGCTGTCCGAGAAAACCGTCAAGACACACGTCTCGAACAT
CCTGATGAAGCTGGATCTGGCGGATCGCACGCAGGCGGCGCTGTGGGCCGTACGACACGGTCTGACCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.377

98.571

0.457
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.4