Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG729_RS18215 Genome accession   NZ_CP108120
Coordinates   4022415..4023014 (-) Length   199 a.a.
NCBI ID   WP_360880464.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4017415..4028014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS18195 (OG729_18175) - 4018130..4018705 (-) 576 WP_405811174.1 SigE family RNA polymerase sigma factor -
  OG729_RS18200 (OG729_18180) - 4019045..4020172 (-) 1128 WP_360880473.1 aspartate-semialdehyde dehydrogenase -
  OG729_RS18205 (OG729_18185) - 4020169..4021440 (-) 1272 WP_405807091.1 aspartate kinase -
  OG729_RS18210 (OG729_18190) - 4021754..4022422 (-) 669 WP_360880467.1 DUF5063 domain-containing protein -
  OG729_RS18215 (OG729_18195) recR 4022415..4023014 (-) 600 WP_360880464.1 recombination mediator RecR Machinery gene
  OG729_RS18220 (OG729_18200) - 4023113..4023448 (-) 336 WP_360880609.1 YbaB/EbfC family nucleoid-associated protein -
  OG729_RS18225 (OG729_18205) - 4023755..4024507 (+) 753 WP_405807092.1 SLATT domain-containing protein -
  OG729_RS18230 (OG729_18210) - 4024849..4025787 (-) 939 WP_405807093.1 class I SAM-dependent methyltransferase -
  OG729_RS18235 (OG729_18215) - 4025861..4026511 (-) 651 WP_360880455.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21911.26 Da        Isoelectric Point: 5.1558

>NTDB_id=654183 OG729_RS18215 WP_360880464.1 4022415..4023014(-) (recR) [Streptomyces sp. NBC_00210]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654183 OG729_RS18215 WP_360880464.1 4022415..4023014(-) (recR) [Streptomyces sp. NBC_00210]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACCGACGTCCGTCGCCTCGCCCACGCACTCCTCGAGGTGAAGGACAAGGTCC
GCTTCTGCGCGGTGTGCGGCAATGTCGCACAGCAGGAGCAGTGCAACATCTGCCGTGATCCGCGACGTGACCTGACGGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATTCGTGAGCTGCTGGCCCGCCTCGCGGACGGCA
CGGTCACCGAGCTCATCCTGGCCACGGATCCCAACCTGGAGGGCGAGGCCACCGCCACGTACCTGGCCCGCATGATCAAA
CCGATGGGTCTGAGGGTCACGCGGCTGGCCAGCGGTCTGCCCGTGGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
GGGACGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462