Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MAK06_RS09935 Genome accession   NZ_CP091876
Coordinates   2008150..2008620 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain FRI-1169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2003150..2013620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAK06_RS09880 (MAK06_03995) - 2003243..2003488 (-) 246 WP_001282074.1 hypothetical protein -
  MAK06_RS09885 (MAK06_03990) - 2003525..2004061 (-) 537 WP_001066443.1 dUTP diphosphatase -
  MAK06_RS09890 (MAK06_03985) - 2004417..2004509 (-) 93 Protein_1909 DUF1024 family protein -
  MAK06_RS09895 (MAK06_03980) - 2004535..2004945 (-) 411 WP_000197968.1 hypothetical protein -
  MAK06_RS09900 (MAK06_03975) - 2004942..2005451 (-) 510 WP_001105598.1 hypothetical protein -
  MAK06_RS09905 (MAK06_03970) - 2005448..2005897 (-) 450 WP_000982711.1 YopX family protein -
  MAK06_RS09910 (MAK06_03965) - 2005962..2006204 (-) 243 WP_000131389.1 SAV1978 family virulence-associated passenger protein -
  MAK06_RS09915 (MAK06_03960) - 2006208..2006576 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  MAK06_RS09920 (MAK06_03955) - 2006589..2006993 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  MAK06_RS09925 (MAK06_03950) - 2007002..2007220 (-) 219 WP_000338530.1 hypothetical protein -
  MAK06_RS09930 (MAK06_03945) - 2007227..2008120 (-) 894 WP_000148322.1 DnaD domain-containing protein -
  MAK06_RS09935 (MAK06_03940) ssbA 2008150..2008620 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  MAK06_RS09940 (MAK06_03935) - 2008621..2009238 (-) 618 WP_071665632.1 MBL fold metallo-hydrolase -
  MAK06_RS09945 (MAK06_03930) - 2009319..2010239 (-) 921 WP_000138475.1 recombinase RecT -
  MAK06_RS09950 (MAK06_03925) - 2010241..2012184 (-) 1944 WP_000700556.1 AAA family ATPase -
  MAK06_RS09955 (MAK06_03920) - 2012193..2012456 (-) 264 WP_001205732.1 hypothetical protein -
  MAK06_RS09960 (MAK06_03915) - 2012465..2012725 (-) 261 WP_000291510.1 DUF1108 family protein -
  MAK06_RS09965 (MAK06_03910) - 2012730..2013032 (-) 303 WP_000165371.1 DUF2482 family protein -
  MAK06_RS09970 (MAK06_03905) - 2013127..2013288 (-) 162 WP_000048132.1 DUF1270 family protein -
  MAK06_RS09975 (MAK06_03900) - 2013285..2013608 (-) 324 WP_001120201.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=654147 MAK06_RS09935 WP_000934760.1 2008150..2008620(-) (ssbA) [Staphylococcus aureus strain FRI-1169]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=654147 MAK06_RS09935 WP_000934760.1 2008150..2008620(-) (ssbA) [Staphylococcus aureus strain FRI-1169]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365