Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG729_RS01365 Genome accession   NZ_CP108120
Coordinates   248581..249258 (+) Length   225 a.a.
NCBI ID   WP_405803701.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 243581..254258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS01350 (OG729_01345) - 243982..244878 (+) 897 WP_405803696.1 GyrI-like domain-containing protein -
  OG729_RS01355 (OG729_01350) - 244904..247084 (-) 2181 WP_405803698.1 MMPL family transporter -
  OG729_RS01360 (OG729_01355) - 247370..248584 (+) 1215 WP_405803699.1 sensor histidine kinase -
  OG729_RS01365 (OG729_01360) vraR 248581..249258 (+) 678 WP_405803701.1 response regulator Regulator
  OG729_RS01370 (OG729_01365) - 249888..251966 (-) 2079 WP_405803703.1 nitrate- and nitrite sensing domain-containing protein -
  OG729_RS01375 (OG729_01370) dhaL 252662..253336 (-) 675 WP_405803705.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24827.42 Da        Isoelectric Point: 5.3856

>NTDB_id=654147 OG729_RS01365 WP_405803701.1 248581..249258(+) (vraR) [Streptomyces sp. NBC_00210]
MSIRVVVVDDQALVRRGFAMILRIHDDIEVVAEAGTGREAIEAARRHRPDVILMDIRMPEMDGLEATSRILEEADWVVRV
LILTTFDPDEYVYEALRAGASAFVLKDTPPEQLATAVRTVAEGGALLAPSITRRLIDRFAEHRTVNTAVAGRLERLTDRE
REILVTVARGASNSEIAKEHFIGAATVKSHVSSILTKLGLRDRIQIVIFAYESGLVEAGDHDVGH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=654147 OG729_RS01365 WP_405803701.1 248581..249258(+) (vraR) [Streptomyces sp. NBC_00210]
GTGAGCATCCGTGTCGTCGTCGTCGACGACCAGGCGCTGGTCCGCAGAGGCTTCGCGATGATTCTGCGGATCCACGACGA
CATCGAGGTCGTGGCCGAGGCCGGGACCGGGCGCGAGGCGATCGAGGCAGCGCGCCGGCATCGTCCGGACGTGATCCTCA
TGGACATCCGCATGCCCGAGATGGACGGCCTCGAGGCGACCTCCCGGATTCTGGAGGAGGCGGACTGGGTCGTCCGGGTG
TTGATCCTGACCACGTTCGACCCGGACGAGTACGTCTACGAGGCACTGCGCGCCGGCGCAAGCGCCTTCGTGCTCAAGGA
CACCCCTCCGGAACAACTCGCCACCGCTGTGCGCACCGTGGCCGAAGGCGGGGCGCTGCTCGCGCCATCGATCACTCGGC
GCCTCATCGACCGGTTCGCCGAGCACCGCACCGTCAACACGGCAGTTGCCGGCCGCCTGGAGCGACTCACCGACCGGGAG
CGCGAGATACTGGTCACCGTCGCTCGGGGGGCCAGCAACTCCGAGATCGCCAAGGAGCACTTCATCGGCGCCGCCACCGT
CAAATCGCACGTGTCGAGCATCCTCACCAAGCTCGGTCTGCGCGATCGCATCCAGATCGTGATCTTCGCGTACGAGAGCG
GACTCGTCGAAGCCGGCGACCACGACGTGGGGCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.935

96.444

0.404
  degU Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387