Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG820_RS18185 Genome accession   NZ_CP108118
Coordinates   3961517..3962920 (+) Length   467 a.a.
NCBI ID   WP_327284711.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3956517..3967920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG820_RS18165 (OG820_18140) - 3956557..3957393 (-) 837 WP_327284715.1 sugar phosphate isomerase/epimerase -
  OG820_RS18170 (OG820_18145) - 3957692..3958621 (-) 930 WP_327284714.1 Ppx/GppA phosphatase family protein -
  OG820_RS18175 (OG820_18150) - 3958685..3959518 (+) 834 WP_327284713.1 hypothetical protein -
  OG820_RS18180 (OG820_18155) - 3959544..3961319 (-) 1776 WP_405756426.1 BACON domain-containing protein -
  OG820_RS18185 (OG820_18160) radA/sms 3961517..3962920 (+) 1404 WP_327284711.1 DNA repair protein RadA Machinery gene
  OG820_RS18190 (OG820_18165) disA 3963093..3964217 (+) 1125 WP_329314225.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG820_RS18195 (OG820_18170) - 3964281..3965084 (-) 804 WP_327285735.1 hypothetical protein -
  OG820_RS18200 (OG820_18175) - 3965254..3965868 (+) 615 WP_327284709.1 phosphatase PAP2 family protein -
  OG820_RS18205 (OG820_18180) - 3965892..3966857 (+) 966 WP_327284708.1 A/G-specific adenine glycosylase -
  OG820_RS18210 (OG820_18185) - 3967032..3967604 (+) 573 WP_030867865.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 48730.84 Da        Isoelectric Point: 8.0067

>NTDB_id=654098 OG820_RS18185 WP_327284711.1 3961517..3962920(+) (radA/sms) [Streptomyces sp. NBC_00211]
MAARTSRSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRINALNDHLFLAAETDLS
AVLGHLDAVQPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVTEVADMGDALRVLPRGRSRAAAKE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=654098 OG820_RS18185 WP_327284711.1 3961517..3962920(+) (radA/sms) [Streptomyces sp. NBC_00211]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCGTGGGGCACCGTGGAGGAGATGGGCGGCGCCCCCGCCGTACGGACGACCG
CCGCCGGGCGGGTGTCGGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACGGCGACCGCCCGGAGCACGGGCGTG
GACGAACTGGACCGCGTCCTCGGCGGCGGGCTCGTACCCGGCGCCGTGGTGCTGCTGGCCGGCGAGCCGGGCGTCGGGAA
GTCGACGCTGCTGCTGGACGTCGCGGCGAAGGCGGCCAGCGACGCGCACCGCACGCTGTACGTCACGGGCGAGGAATCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTGAACGACCACCTCTTCCTCGCCGCCGAAACCGACCTTTCC
GCCGTACTGGGCCACCTCGACGCCGTACAGCCCTCGCTGCTGGTCCTGGACTCCGTACAGACCGTGGCCTCTCCCGAGAT
CGACGGCGCGCCCGGCGGAATGGCCCAGGTCCGCGAGGTGGCCGGAGCATTGATCCGCGCCTCCAAGGAGCGCGGGATGG
CCACCCTGCTCGTCGGGCACGTCACCAAGGACGGGGCGATCGCCGGACCCCGCCTGTTGGAGCACCTGGTGGACGTCGTC
CTCAGCTTCGAGGGCGACCGGCACGCACGGCTGCGCCTCGTGCGCGGCGTGAAGAACCGGTACGGGGCCACCGACGAGGT
CGGCTGCTTCGAACTCCACGACGAGGGGATCACCGGGCTCGCGGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCGGAGG
CCGTGCCCGGAACCTGCCTGACGGTGACCCTGGAGGGCAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGAC
TCGCAGATCCCCTCGCCCCGGCGGACCACCTCGGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGCGACATCTACTCCGCCACCGTGGGCGGGGTGAAGCTGACGGAGCCGGCCG
CCGACCTGGCGATCGCGCTGGCGCTGGCCTCGGCGGCGAGCGACGTGCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAG
GTCGGCCTGGCGGGCGAGGTGCGGCGCGTGACCGGGGTGCAGCGACGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCA
CGCCCTGGTCCCGGCCGACCCGGGGAAGGTGCCGGCCGGGATGAAGGTCACGGAGGTCGCGGACATGGGCGACGCGCTGC
GCGTCCTGCCGCGCGGCCGGTCGCGCGCGGCGGCCAAGGAGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(85-225)

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.493

97.216

0.433
  radA Streptococcus pneumoniae Rx1

42.35

96.574

0.409
  radA Streptococcus pneumoniae D39

42.35

96.574

0.409
  radA Streptococcus pneumoniae R6

42.35

96.574

0.409
  radA Streptococcus pneumoniae TIGR4

42.35

96.574

0.409
  radA Streptococcus mitis SK321

43.794

91.435

0.4
  radA Streptococcus mitis NCTC 12261

43.794

91.435

0.4