Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG820_RS04920 Genome accession   NZ_CP108118
Coordinates   1011067..1011747 (+) Length   226 a.a.
NCBI ID   WP_327280104.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00211     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006067..1016747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG820_RS04895 (OG820_04895) - 1006767..1007732 (+) 966 WP_327280108.1 serine protease -
  OG820_RS04900 (OG820_04900) - 1007686..1008081 (-) 396 WP_327280107.1 hypothetical protein -
  OG820_RS04905 (OG820_04905) - 1008147..1008689 (-) 543 WP_327280106.1 HXXEE domain-containing protein -
  OG820_RS04910 (OG820_04910) - 1008686..1009633 (-) 948 WP_327280105.1 AEC family transporter -
  OG820_RS04915 (OG820_04915) - 1009718..1011070 (+) 1353 WP_405758398.1 sensor histidine kinase -
  OG820_RS04920 (OG820_04920) vraR 1011067..1011747 (+) 681 WP_327280104.1 response regulator transcription factor Regulator
  OG820_RS04925 (OG820_04925) - 1011870..1012913 (+) 1044 WP_327280102.1 alpha/beta hydrolase -
  OG820_RS04930 (OG820_04930) - 1012910..1014121 (+) 1212 WP_329315515.1 acyltransferase -
  OG820_RS04935 (OG820_04935) - 1014143..1014565 (-) 423 WP_327280100.1 DUF350 domain-containing protein -
  OG820_RS04940 (OG820_04940) - 1014679..1016523 (+) 1845 WP_327280099.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24288.14 Da        Isoelectric Point: 5.6980

>NTDB_id=654069 OG820_RS04920 WP_327280104.1 1011067..1011747(+) (vraR) [Streptomyces sp. NBC_00211]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVQVSRTVHPDVVLMDVRMPEMDGLTAARELLGPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=654069 OG820_RS04920 WP_327280104.1 1011067..1011747(+) (vraR) [Streptomyces sp. NBC_00211]
TTGACCATCCGTGTGATCATCGTCGACGACCAGGCCATGGTACGGGCGGGGTTCGCCGCCCTCCTGTCGGCGCAGGCCGA
CATCGACGTGGTGGGCGAGGCCCCCGACGGCCGGCAGGGGGTACAGGTCTCGCGCACCGTGCATCCCGACGTGGTGCTGA
TGGACGTGCGCATGCCGGAGATGGACGGACTGACGGCGGCCCGGGAGCTGCTCGGCCCGCCGCCGGGGGTCGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCCTCCGGGTTCCT
GCTGAAGGACGCGCCGCCCGCCGACCTGATCGCGGCGGTCCGGGTGGTCGCGTCCGGCGAGGCCCTGCTGGCGCCCTCGG
TGACCCGGCGGCTGATCGCGGACTTCGTCCAGCAGCGGCCGGCGCCGCGCAAGGACCCGGCGCTGCGGCTGAACGGGCTG
ACCCCGCGGGAGACCGAGGTACTGGAACTGATCGCGCGCGGGCTGTCGAACCAGGAGATCGCCGGGCACCTGGTGCTGGC
GGAGCAGACCGTCAAGACGCACATCGGGCGGGTGCTGGCCAAGCTGGACCTGCGCGACCGGGCCCAAGCGGTGATCTTCG
CCTACGAGGCGGGCCTCGTCCGCCCGGGCGATTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.629

97.788

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.376