Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS34485 Genome accession   NZ_CP108115
Coordinates   7561398..7562060 (+) Length   220 a.a.
NCBI ID   WP_398874855.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7556398..7567060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS34460 (OHA17_34405) - 7556625..7557302 (-) 678 WP_053729662.1 response regulator transcription factor -
  OHA17_RS34465 (OHA17_34410) - 7557436..7558014 (+) 579 WP_406509738.1 hypothetical protein -
  OHA17_RS34470 (OHA17_34415) - 7558355..7559299 (+) 945 WP_406509739.1 ABC transporter ATP-binding protein -
  OHA17_RS34475 (OHA17_34420) - 7559296..7560111 (+) 816 WP_406509740.1 ABC transporter permease subunit -
  OHA17_RS34480 (OHA17_34425) - 7560176..7561393 (+) 1218 WP_406509741.1 sensor histidine kinase -
  OHA17_RS34485 (OHA17_34430) vraR 7561398..7562060 (+) 663 WP_398874855.1 response regulator Regulator
  OHA17_RS34490 (OHA17_34435) - 7562750..7562968 (-) 219 Protein_6800 transposase -
  OHA17_RS34495 (OHA17_34440) - 7564491..7564760 (+) 270 WP_406509742.1 hypothetical protein -
  OHA17_RS34500 (OHA17_34445) - 7564764..7565123 (-) 360 WP_406509743.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24056.80 Da        Isoelectric Point: 4.9997

>NTDB_id=654053 OHA17_RS34485 WP_398874855.1 7561398..7562060(+) (vraR) [Streptomyces sp. NBC_00212]
MPIRVLLVDDEPLLRMAFTMVLDAQTDMEPVGEAGDGAEAVRLAHELRPDVVLMDVRMPGTDGIEATERIVAESPHSRVL
ILTTFDLDEYAFAGLRAGASGFLLKNALPQELLAAIRSVAAGDAVVAPRITRLLLENFAHQLPAATDPGKDDRLARLTAR
EREVLTEVGRGLSNSEIAALLHLAEATVKTHLNRILVKLELRDRVQAVVFAYETRLVRPT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=654053 OHA17_RS34485 WP_398874855.1 7561398..7562060(+) (vraR) [Streptomyces sp. NBC_00212]
ATGCCCATTCGTGTCCTGCTCGTCGACGACGAGCCCCTGCTGCGCATGGCCTTCACCATGGTGCTCGACGCGCAGACCGA
CATGGAACCCGTCGGCGAGGCAGGCGACGGCGCCGAGGCCGTCCGGCTCGCCCACGAGTTGCGGCCCGATGTCGTACTGA
TGGATGTGCGAATGCCCGGCACCGACGGCATCGAGGCGACCGAGCGCATCGTCGCCGAGTCACCGCATTCGAGGGTTCTC
ATCCTGACCACGTTCGACCTCGACGAGTACGCCTTCGCCGGACTGCGGGCGGGCGCCTCGGGCTTCCTGCTCAAGAACGC
ACTGCCGCAGGAACTGCTCGCCGCGATCCGCAGTGTGGCGGCCGGCGACGCGGTCGTCGCGCCCCGCATCACGCGGCTGC
TCCTGGAGAACTTCGCCCATCAACTCCCCGCCGCCACCGACCCCGGCAAGGACGACCGGCTCGCCAGGCTCACCGCCCGC
GAACGCGAAGTGCTCACGGAGGTCGGCCGCGGGCTGTCCAACTCGGAGATCGCCGCCCTGCTGCACCTGGCCGAGGCGAC
GGTGAAGACCCATCTGAACCGGATCCTGGTCAAACTGGAGCTGCGCGACCGGGTCCAGGCCGTGGTGTTCGCCTACGAAA
CCCGGCTGGTGCGGCCTACCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.615

99.091

0.373
  degU Bacillus subtilis subsp. subtilis str. 168

35.965

100

0.373