Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS34230 Genome accession   NZ_CP108115
Coordinates   7506319..7506984 (+) Length   221 a.a.
NCBI ID   WP_053728554.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7501319..7511984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS34205 (OHA17_34150) - 7501359..7502246 (+) 888 WP_398878036.1 carbohydrate ABC transporter permease -
  OHA17_RS34210 (OHA17_34155) - 7502258..7503568 (+) 1311 WP_406509701.1 alpha-glucosidase/alpha-galactosidase -
  OHA17_RS34215 (OHA17_34160) - 7503603..7504058 (-) 456 WP_053728551.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OHA17_RS34220 (OHA17_34165) - 7504262..7504960 (+) 699 WP_406509702.1 TetR/AcrR family transcriptional regulator -
  OHA17_RS34225 (OHA17_34170) - 7505060..7506322 (+) 1263 WP_406509703.1 sensor histidine kinase -
  OHA17_RS34230 (OHA17_34175) vraR 7506319..7506984 (+) 666 WP_053728554.1 response regulator transcription factor Regulator
  OHA17_RS34235 (OHA17_34180) - 7506945..7507232 (-) 288 WP_398878044.1 DUF6332 family protein -
  OHA17_RS34240 (OHA17_34185) - 7507393..7507797 (+) 405 WP_406509704.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHA17_RS34245 (OHA17_34190) - 7507860..7509074 (-) 1215 WP_406509705.1 MFS transporter -
  OHA17_RS34250 (OHA17_34195) - 7509405..7510625 (+) 1221 WP_398878050.1 ROK family protein -
  OHA17_RS34255 (OHA17_34200) - 7510613..7511497 (-) 885 WP_406509706.1 phosphotriesterase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23950.76 Da        Isoelectric Point: 4.6996

>NTDB_id=654051 OHA17_RS34230 WP_053728554.1 7506319..7506984(+) (vraR) [Streptomyces sp. NBC_00212]
MIRVLLADDQLLVRAGFRALLDAQGDIEVVGEAADGEEALGLVRQLRPDIVLMDIRMPRLDGLAATRRITSDPDLAAVKV
VMLTTFELDEYVFEAIRAGASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAADTLAELTERER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=654051 OHA17_RS34230 WP_053728554.1 7506319..7506984(+) (vraR) [Streptomyces sp. NBC_00212]
TTGATCCGCGTACTGCTTGCCGACGACCAGCTCCTGGTGAGGGCGGGGTTCCGGGCGCTGCTCGACGCCCAGGGCGACAT
CGAGGTGGTGGGGGAGGCCGCCGACGGCGAGGAGGCGTTGGGCCTGGTGCGCCAACTGCGGCCGGACATCGTCCTGATGG
ACATCCGGATGCCCCGGCTCGACGGCCTCGCCGCCACCCGCCGGATCACGTCCGACCCGGACCTGGCCGCGGTGAAGGTG
GTCATGCTCACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCGCCGGTGCCTCCGGCTTCCTCGTGAAGGA
CACCGAGCCGGAGGAACTGCTGCGCGCGGTCCGGGCCGTGGTCGACGGCGACGCCCTGCTCTCGCCCGGCGTGACCCGGC
GGCTGATCGCCGAGTTCGCCGCGCGCTCCAAGGAGCCGGCCGCGGCCGACACCCTGGCCGAACTCACCGAGCGGGAGCGG
GAGGTGATGGCGCTGGTCGGCATCGGCCTCTCCAACGACGAGATCGCCCGCCGCCTCGTCGTCAGCCCGCTCACCGCGAA
GACCCACGTCAGCCGGGCGATGGTGAAGCTCGGCGCCCGCGACCGGGCCCAACTGGTGGTGCTCGCCTACGAGTCGGGTC
TGGTGCGCCCGGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

97.285

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

35.398

100

0.362