Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS33500 Genome accession   NZ_CP108115
Coordinates   7343890..7344540 (-) Length   216 a.a.
NCBI ID   WP_053724229.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7338890..7349540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS33485 (OHA17_33425) - 7340546..7341418 (-) 873 WP_406509593.1 alpha/beta fold hydrolase -
  OHA17_RS33490 (OHA17_33430) - 7341760..7342524 (+) 765 WP_406509594.1 GntR family transcriptional regulator -
  OHA17_RS33495 (OHA17_33435) - 7342644..7343801 (-) 1158 WP_398877813.1 ROK family transcriptional regulator -
  OHA17_RS33500 (OHA17_33440) vraR 7343890..7344540 (-) 651 WP_053724229.1 response regulator transcription factor Regulator
  OHA17_RS33505 (OHA17_33445) - 7344769..7345944 (-) 1176 WP_406509595.1 sensor histidine kinase -
  OHA17_RS33510 (OHA17_33450) - 7346052..7346984 (+) 933 WP_406509596.1 ATP-binding cassette domain-containing protein -
  OHA17_RS33515 (OHA17_33455) - 7346988..7347734 (+) 747 WP_406509597.1 ABC transporter permease -
  OHA17_RS33520 (OHA17_33460) - 7347801..7348235 (+) 435 WP_398877821.1 hypothetical protein -
  OHA17_RS33525 (OHA17_33465) mug 7348287..7348832 (-) 546 WP_406510880.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22786.35 Da        Isoelectric Point: 4.6286

>NTDB_id=654049 OHA17_RS33500 WP_053724229.1 7343890..7344540(-) (vraR) [Streptomyces sp. NBC_00212]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVEDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVNAVRLVAEGDSLLFPAAVRALAAEYGNGAARSALAEAALTDREAAV
LRLMARGLSNAEIAAKLIVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=654049 OHA17_RS33500 WP_053724229.1 7343890..7344540(-) (vraR) [Streptomyces sp. NBC_00212]
ATGCCGGTAACCGTACTTCTGGTCGACGATGAGCCTTTGGTCCGCGCGGGTCTGCGGGCCGTGCTCGAAGCGCAGCCCGA
CATCGAGGTGGTGGGCGAGGCGGCCGACGGGGCGGCCGTGATCCCGCTGGTGCGGCAATTGCGGCCGGACGTCGTCGCGA
TGGATGTGCGGATGCCGCTCCTGGACGGCATAGAGGCGACCCGGGCGGTGCTGCGCACGGTGGAGGACCCGCCGAAGATC
CTGGTGGTGACGACCTTCGAGAACGATGAGTACGTGTACGAGGCGCTGCGGGCCGGGGCCGACGGCTTCCTGCTCAAGCG
GGCCCGGCCCGCCGAGATCGTCAACGCGGTCCGGCTCGTGGCGGAGGGCGACTCGCTGCTGTTCCCGGCGGCGGTGCGCG
CGCTCGCCGCCGAGTACGGCAACGGTGCGGCGCGCTCGGCGCTCGCCGAGGCGGCGCTCACCGACCGGGAGGCCGCGGTG
CTGCGCCTGATGGCGCGGGGACTTTCCAACGCGGAGATCGCCGCCAAGCTCATCGTCGGCACGGAGACCGTGAAGACGCA
CGTGAGCGCGGTGCTCGCGAAGCTGGGTGCCCGGGACCGCACCCAGGCGGTCATCGCCGCGTACGAGTCCGGTTTCGTGG
CCCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.86

99.537

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.37