Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS30640 Genome accession   NZ_CP108115
Coordinates   6721647..6722291 (+) Length   214 a.a.
NCBI ID   WP_053724166.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6716647..6727291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS30620 (OHA17_30555) - 6717546..6718217 (-) 672 WP_406509216.1 transglycosylase SLT domain-containing protein -
  OHA17_RS30625 (OHA17_30560) - 6718486..6719565 (-) 1080 WP_406509217.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHA17_RS30630 (OHA17_30565) - 6719562..6720284 (-) 723 WP_406509218.1 SDR family NAD(P)-dependent oxidoreductase -
  OHA17_RS30635 (OHA17_30570) - 6720470..6721654 (+) 1185 WP_406509219.1 GAF domain-containing sensor histidine kinase -
  OHA17_RS30640 (OHA17_30575) vraR 6721647..6722291 (+) 645 WP_053724166.1 response regulator transcription factor Regulator
  OHA17_RS30645 (OHA17_30580) - 6722452..6722688 (+) 237 WP_406509220.1 chaplin -
  OHA17_RS30650 (OHA17_30585) - 6722974..6723759 (-) 786 WP_406509221.1 hypothetical protein -
  OHA17_RS30655 (OHA17_30590) - 6724127..6724918 (+) 792 WP_053724168.1 ABC transporter ATP-binding protein -
  OHA17_RS30660 (OHA17_30595) - 6724968..6725396 (+) 429 WP_406509222.1 NfeD family protein -
  OHA17_RS30665 (OHA17_30600) - 6725476..6726426 (+) 951 WP_053724170.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23035.39 Da        Isoelectric Point: 6.1563

>NTDB_id=654044 OHA17_RS30640 WP_053724166.1 6721647..6722291(+) (vraR) [Streptomyces sp. NBC_00212]
MADKVIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGIEALRKLRELANGA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLSQDDGHGGTGRGTTLTEREKEV
LALIADGRSNREIARHLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=654044 OHA17_RS30640 WP_053724166.1 6721647..6722291(+) (vraR) [Streptomyces sp. NBC_00212]
GTGGCTGACAAGGTGATCAGGGTCCTGCTCGTGGACGACCACCAGGTGGTCCGCCGAGGACTGCGTACGTTCCTGGAAGT
ACAGGACGACATAGAAGTGGTGGGGGAGGCCTCCGACGGCGCCGAGGGCGTGGCCCGCGCCGAGGAGCTGAAGCCGGACG
TCGTCCTGATGGACGTCAAGATGCCGGGCATGGACGGCATCGAGGCCCTGCGCAAGCTCCGCGAGCTCGCCAATGGAGCC
AAGGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGGGCGGGCGCTTCCGGCTACGTATA
CAAGGACGTCGACCCGGACGCGCTGGCCGGAGCGATCCGCTCGGTGCACGCGGGCCATGTGCTGCTCCAGCCCGAGGTGG
CGGGCGCCCTGCTCAGCCAGGACGACGGGCACGGCGGCACCGGCCGTGGCACGACCCTGACCGAGCGGGAGAAGGAGGTC
CTGGCGCTGATCGCGGACGGCCGCTCCAACCGCGAGATCGCCCGCCACCTCGTGCTGTCCGAGAAGACCGTCAAGACGCA
CGTCTCCAACATCCTGATGAAGCTGGACCTCGCCGACCGCACGCAGGCCGCGCTGTGGGCCGTACGGCACGGCGTGACGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.411

96.729

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.402