Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA17_RS21805 Genome accession   NZ_CP108115
Coordinates   4737241..4737840 (+) Length   199 a.a.
NCBI ID   WP_406507987.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4732241..4742840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS21785 (OHA17_21715) - 4732349..4734772 (+) 2424 WP_406507985.1 dolichyl-phosphate beta-glucosyltransferase -
  OHA17_RS21790 (OHA17_21720) - 4734968..4735618 (+) 651 WP_053730109.1 hypothetical protein -
  OHA17_RS21795 (OHA17_21725) - 4735675..4736415 (-) 741 WP_406507986.1 SLATT domain-containing protein -
  OHA17_RS21800 (OHA17_21730) - 4736792..4737127 (+) 336 WP_344377127.1 YbaB/EbfC family nucleoid-associated protein -
  OHA17_RS21805 (OHA17_21735) recR 4737241..4737840 (+) 600 WP_406507987.1 recombination mediator RecR Machinery gene
  OHA17_RS21810 (OHA17_21740) - 4737873..4738532 (+) 660 WP_406507988.1 DUF5063 domain-containing protein -
  OHA17_RS21815 (OHA17_21745) - 4738776..4740056 (+) 1281 WP_189961838.1 aspartate kinase -
  OHA17_RS21820 (OHA17_21750) - 4740053..4741111 (+) 1059 WP_406507989.1 aspartate-semialdehyde dehydrogenase -
  OHA17_RS21825 (OHA17_21755) - 4741379..4742050 (+) 672 WP_344377121.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21953.30 Da        Isoelectric Point: 5.1721

>NTDB_id=654027 OHA17_RS21805 WP_406507987.1 4737241..4737840(+) (recR) [Streptomyces sp. NBC_00212]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPIDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDQTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=654027 OHA17_RS21805 WP_406507987.1 4737241..4737840(+) (recR) [Streptomyces sp. NBC_00212]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGATCGACGTGCGCCGCCTCGCGCACGCCCTCCTGGAAGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGCAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGACCAGACGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCCATCGAGCGGACCCGCGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGCGCCATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTCGCCCGCCTGGCGGACGGCT
CGGTCACCGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCCACCGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACTCGGCTCGCCAGCGGCCTGCCGGTGGGCGGCGACCTCGAATACGCCGACGAGGTCACCCT
GGGCCGGGCCTTCGAAGGAAGGCGGCTGCTCGATGTATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467