Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS20935 Genome accession   NZ_CP108115
Coordinates   4560030..4560659 (+) Length   209 a.a.
NCBI ID   WP_406510773.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4555030..4565659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS20920 (OHA17_20850) - 4556501..4557520 (+) 1020 WP_406507857.1 alpha/beta hydrolase -
  OHA17_RS20925 (OHA17_20855) - 4557513..4558685 (+) 1173 WP_406507858.1 acyltransferase -
  OHA17_RS20930 (OHA17_20860) - 4558696..4560000 (+) 1305 WP_406507859.1 sensor histidine kinase -
  OHA17_RS20935 (OHA17_20865) vraR 4560030..4560659 (+) 630 WP_406510773.1 response regulator Regulator
  OHA17_RS20940 (OHA17_20870) mgtA 4561003..4563729 (-) 2727 WP_406507860.1 magnesium-translocating P-type ATPase -
  OHA17_RS20945 (OHA17_20875) - 4564163..4564405 (+) 243 WP_406507861.1 hypothetical protein -
  OHA17_RS20950 (OHA17_20880) - 4564465..4565286 (+) 822 WP_406507862.1 trimeric intracellular cation channel family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22331.77 Da        Isoelectric Point: 4.7089

>NTDB_id=654021 OHA17_RS20935 WP_406510773.1 4560030..4560659(+) (vraR) [Streptomyces sp. NBC_00212]
MMVRQGFTVLLNAEPDIEVVGQAVNGLEAVALAAELAPDVVLMDIRMPELGGIEATRRVTGEAGSQVKVLVLTTFDLDEY
VYEALRAGASGFLLKDASADELAHAVRVVASGDALLAPNITKRLIAEFSRLTEAPRAPLKERVGVLTERETEVLSLIAQG
LSNAEIAAGLVLAEQTVKTHVSRVLVKLGLRDRTQAAVYAYESRLVTPS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=654021 OHA17_RS20935 WP_406510773.1 4560030..4560659(+) (vraR) [Streptomyces sp. NBC_00212]
ATGATGGTCCGTCAGGGATTCACGGTGCTGCTCAACGCGGAGCCGGACATCGAGGTGGTGGGGCAGGCGGTCAACGGCCT
CGAAGCGGTGGCGCTCGCGGCCGAACTCGCCCCCGACGTTGTCCTGATGGACATCCGCATGCCGGAACTGGGGGGTATCG
AGGCGACCCGTCGCGTTACGGGGGAGGCCGGGTCGCAGGTGAAGGTGCTTGTTCTCACCACCTTCGACCTCGACGAGTAC
GTGTACGAGGCGCTGCGCGCGGGGGCGTCGGGGTTCTTGCTGAAGGATGCCTCCGCCGATGAACTCGCCCATGCGGTACG
GGTGGTGGCGTCCGGGGACGCCCTGCTCGCCCCGAACATCACCAAGCGCCTGATCGCGGAGTTCTCGCGGCTGACGGAGG
CGCCGCGGGCTCCGCTGAAGGAGCGGGTGGGTGTCTTGACGGAGCGCGAGACGGAGGTGCTGTCCCTGATCGCGCAGGGC
CTGTCCAACGCGGAGATCGCGGCGGGGCTGGTGCTGGCTGAGCAGACGGTGAAGACGCATGTCAGCCGGGTGCTGGTGAA
GCTGGGGTTGCGGGACCGTACGCAGGCGGCGGTGTACGCGTACGAGTCCCGCCTGGTAACCCCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-106)

Bacterial regulatory proteins, luxR family (GerE)

(145-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.878

98.086

0.44
  degU Bacillus subtilis subsp. subtilis str. 168

40.654

100

0.416