Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS17510 Genome accession   NZ_CP108115
Coordinates   3851344..3852018 (-) Length   224 a.a.
NCBI ID   WP_406507391.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3846344..3857018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS17485 (OHA17_17420) - 3846690..3847613 (-) 924 WP_406507387.1 Rossmann-like and DUF2520 domain-containing protein -
  OHA17_RS17490 (OHA17_17425) - 3847745..3848947 (+) 1203 WP_406507388.1 threonine aldolase family protein -
  OHA17_RS17495 (OHA17_17430) - 3849007..3849234 (-) 228 WP_406507389.1 hypothetical protein -
  OHA17_RS17500 (OHA17_17435) - 3849398..3850510 (+) 1113 WP_053729129.1 DUF5937 family protein -
  OHA17_RS17505 (OHA17_17440) - 3850692..3851297 (-) 606 WP_406507390.1 AAA family ATPase -
  OHA17_RS17510 (OHA17_17445) vraR 3851344..3852018 (-) 675 WP_406507391.1 response regulator Regulator
  OHA17_RS17515 (OHA17_17450) - 3852110..3853318 (-) 1209 WP_406507392.1 sensor histidine kinase -
  OHA17_RS17520 (OHA17_17455) - 3853415..3854398 (+) 984 WP_406507393.1 SAM-dependent methyltransferase -
  OHA17_RS17525 (OHA17_17460) - 3854718..3855860 (+) 1143 WP_406507394.1 NADH-quinone oxidoreductase subunit D -
  OHA17_RS17530 (OHA17_17465) - 3855896..3856903 (-) 1008 WP_406507395.1 PhlD -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24116.19 Da        Isoelectric Point: 5.7870

>NTDB_id=654014 OHA17_RS17510 WP_406507391.1 3851344..3852018(-) (vraR) [Streptomyces sp. NBC_00212]
MTIRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIDILRATAVDVVLMDVRMPRLDGVEATRRICEAPNPPKVL
ILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLGAIRSVHSGDAVVAPSTTRRLLDRFAPMLPAAGKEPEHKQLGKLTER
EREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVLAYETGLVRAGGGAV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=654014 OHA17_RS17510 WP_406507391.1 3851344..3852018(-) (vraR) [Streptomyces sp. NBC_00212]
ATGACGATCCGCGTGATGCTCGTCGACGACCAGGTGCTGCTGCGCACCGGGTTCCGGATGGTGCTCGCCGCCCAGCCGGA
CATGGAGGTCGTCGCGGAGGCGGGCGACGGCGCGGAGGCGATCGACATCCTGCGCGCGACCGCCGTCGACGTGGTCCTGA
TGGACGTGCGCATGCCGAGGCTGGACGGCGTGGAGGCCACCCGGCGGATCTGCGAGGCGCCGAACCCGCCCAAGGTGTTG
ATCCTGACCACGTTCGACCTCGACGAGTACGCGTTTTCCGGTCTGAAGGCGGGCGCCAGCGGCTTCATGCTGAAGGACGT
GCCGCCGGCCGAACTCCTCGGCGCGATCCGCTCGGTGCACAGCGGCGACGCGGTGGTCGCGCCGTCGACGACCCGGCGCC
TGCTCGACCGGTTCGCCCCGATGCTCCCGGCCGCCGGCAAGGAGCCCGAGCACAAGCAGCTGGGGAAGCTGACCGAGCGC
GAACGCGAGGTCATGCTCCTGGTCGCGCAGGGCCTCTCCAACGGCGAGATCGCCGCCCGCCTGGTCCTGTCGGAGGCCAC
GGTCAAGACCCACGTGGGCCGCATCCTGACCAAGCTGGAACTGCGCGACCGCGTCCAGGTCGTGGTCCTGGCGTACGAGA
CGGGCCTGGTGCGCGCGGGGGGCGGCGCGGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.532

97.321

0.375
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

99.554

0.375